DMR Stats | |
---|---|
Position | chr2:171573651-171573900 (View on UCSC) |
Width | 250bp |
Genomic Context | 3' end |
Nearest Genes | SP5 (0bp away) |
ANODEV p-value | 5.89420455157e-05 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1268 | SP5 | 17256 | uc002uge.3 | chr2 | 171571857 | 171574498 | + | 250 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (100) | 100.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
1268 | chr2 | 171569878 | 171573904 | cpgIsland | CpG: 331 | length:4027, cpgNum:331, gcNum:2448, perCpg:16.4, perGc:60.8, obsExp:0.89, srow:15691 |
1268 | chr2 | 171573474 | 171573737 | wgEncodeRegTfbsClusteredV3 | BHLHE40 | score:1000, expCount:3, expNums:171,276,423, expScores:88,213,1000, srow:2326694 |
1268 | chr2 | 171573300 | 171573891 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:68, expNums:2,5,12,14,16,18,20,35,37,39,42,44,48,49,137,174,262,290,463,595,597,601,605,607,609,615,618,635,636,638,639,640,642,643,644,645,646,647,652,653,654,655,656,657,658,659,660,661,662,664,665,667,668,669,671,672,673,674,675,676,677,678,682,683,684,685,686,687, expScores:219,718,444,150,428,104,641,150,586,142,306,345,255,231,1000,664,317,132,364,1000,912,160,548,172,551,133,142,573,466,272,665,370,557,260,274,119,198,418,287,439,439,138,101,517,431,549,117,665,458,116,577,605,120,397,414,339,260,267,151,588,823,495,583,322,118,452,376,890, srow:2326684 |
1268 | chr2 | 171573366 | 171574175 | wgEncodeRegDnaseClusteredV2 | 72 | score:1000, srow:664856 |
1268 | chr2 | 171573576 | 171573885 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:149, expCount:1, expNums:358, expScores:149, srow:2326700 |
1268 | chr2 | 171573258 | 171573691 | wgEncodeRegTfbsClusteredV3 | EP300 | score:154, expCount:2, expNums:145,190, expScores:150,154, srow:2326679 |
1268 | chr2 | 171573271 | 171573660 | wgEncodeRegTfbsClusteredV3 | MAZ | score:157, expCount:1, expNums:440, expScores:157, srow:2326681 |
1268 | chr2 | 171573294 | 171573673 | wgEncodeRegTfbsClusteredV3 | ARID3A | score:160, expCount:1, expNums:422, expScores:160, srow:2326682 |
1268 | chr2 | 171573412 | 171573759 | wgEncodeRegTfbsClusteredV3 | REST | score:187, expCount:2, expNums:144,188, expScores:183,187, srow:2326690 |
1268 | chr2 | 171573412 | 171573661 | wgEncodeRegTfbsClusteredV3 | MYC | score:194, expCount:1, expNums:614, expScores:194, srow:2326691 |
1268 | chr2 | 171573491 | 171573740 | wgEncodeRegTfbsClusteredV3 | TEAD4 | score:230, expCount:1, expNums:160, expScores:230, srow:2326696 |
1268 | chr2 | 171573433 | 171573722 | wgEncodeRegTfbsClusteredV3 | ZNF143 | score:237, expCount:1, expNums:361, expScores:237, srow:2326693 |
1268 | chr2 | 171573345 | 171573800 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:240, expCount:1, expNums:195, expScores:240, srow:2326686 |
1268 | chr2 | 171573792 | 171573793 | phastConsElements100way | lod=17 | score:274, srow:4941929 |
1268 | chr2 | 171573831 | 171573832 | phastConsElements100way | lod=18 | score:280, srow:4941932 |
1268 | chr2 | 171573504 | 171573763 | wgEncodeRegTfbsClusteredV3 | TCF12 | score:283, expCount:1, expNums:159, expScores:283, srow:2326698 |
1268 | chr2 | 171573478 | 171573753 | wgEncodeRegTfbsClusteredV3 | USF2 | score:287, expCount:1, expNums:360, expScores:287, srow:2326695 |
1268 | chr2 | 171573789 | 171573790 | phastConsElements100way | lod=39 | score:356, srow:4941928 |
1268 | chr2 | 171573843 | 171573847 | phastConsElements100way | lod=48 | score:377, srow:4941934 |
1268 | chr2 | 171573876 | 171573886 | phastConsElements100way | lod=53 | score:387, srow:4941936 |
1268 | chr2 | 171573795 | 171573802 | phastConsElements100way | lod=63 | score:404, srow:4941930 |
1268 | chr2 | 171573888 | 171573898 | phastConsElements100way | lod=76 | score:422, srow:4941937 |
1268 | chr2 | 171573834 | 171573841 | phastConsElements100way | lod=83 | score:431, srow:4941933 |
1268 | chr2 | 171573389 | 171573788 | wgEncodeRegTfbsClusteredV3 | MXI1 | score:477, expCount:1, expNums:441, expScores:477, srow:2326689 |
1268 | chr2 | 171573720 | 171573736 | phastConsElements100way | lod=160 | score:496, srow:4941925 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
1268 | cellmeth_recounts | PrEC: 138, LNCaP: 1546, DU145: 18 | |
1268 | cellmeth_diffreps_PrECvsLNCaP | A=402, B=4269, Length=2660, Event=Up, log2FC=3.41, padj=0 | |
1268 | cellmeth_diffreps_PrECvsDU145 | A=395, B=41, Length=1480, Event=Down, log2FC=-3.27, padj=0 | |
1268 | cellmeth_diffreps_LNCaPvsDU145 | A=4563.75, B=46.77, Length=2640, Event=Down, log2FC=-6.61, padj=0 | |
1268 | cellexp | id=ENSG00000204335, name=SP5, PrEC=4, str=0, LNCaP=2, str=0, DU145=98, str=73 | |
1268 | tcgameth | site:cg00858840, B=0.5, L=0.64, H=0.61 | |
1268 | tcgameth | site:cg21829923, B=0.63, L=0.75, H=0.73 | |
1268 | tcgaexp | gene=SP5, entrez=389058, pos=chr2:171571857-171574498(+), B=174, L=495, M=434, H=410 |