DMR 24873 chr1:1167951-1168200 (250bp)
| DMR Stats | |
|---|---|
| Position | chr1:1167951-1168200 (View on UCSC) |
| Width | 250bp |
| Genomic Context | promoter |
| Nearest Genes | B3GALT6 (0bp away) |
| ANODEV p-value | 0.0274000105313 |
| Frequencies | Benign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24873 | B3GALT6 | 52 | uc001adk.3 | chr1 | 1167629 | 1170420 | + | 250 | 100.0 | 0.17 | 0 | 71.2 | E1 (100) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 24873 | chr1 | 1167002 | 1168985 | cpgIsland | CpG: 240 | length:1984, cpgNum:240, gcNum:1305, perCpg:24.2, perGc:65.8, obsExp:1.12, srow:66 |
| 24873 | chr1 | 1167533 | 1168095 | wgEncodeRegTfbsClusteredV3 | E2F1 | score:1000, expCount:1, expNums:390, expScores:1000, srow:2415 |
| 24873 | chr1 | 1167477 | 1168288 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:1000, expCount:3, expNums:215,386,495, expScores:366,524,205, srow:2413 |
| 24873 | chr1 | 1166645 | 1168226 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:63, expNums:32,61,62,78,104,105,123,124,130,131,146,147,163,168,191,192,206,207,228,229,259,275,283,306,307,326,328,330,332,334,336,338,340,362,366,402,445,446,461,465,520,521,522,523,524,525,563,564,577,583,585,596,599,602,610,613,616,619,622,632,633,634,637, expScores:268,1000,486,354,728,1000,358,682,452,416,268,390,620,346,459,1000,393,881,629,1000,311,400,398,263,229,936,780,285,559,183,1000,573,429,118,228,916,116,408,226,1000,456,420,630,409,208,994,737,570,295,834,608,213,408,423,163,188,249,343,884,969,426,432,605, srow:2346 |
| 24873 | chr1 | 1167243 | 1168240 | wgEncodeRegTfbsClusteredV3 | MAX | score:1000, expCount:9, expNums:223,278,296,352,395,439,460,511,576, expScores:193,371,318,327,210,134,399,477,367, srow:2389 |
| 24873 | chr1 | 1167721 | 1168215 | wgEncodeRegDnaseClusteredV2 | 27 | score:1000, srow:452 |
| 24873 | chr1 | 1168004 | 1168259 | wgEncodeRegTfbsClusteredV3 | ZBTB33 | score:119, expCount:1, expNums:246, expScores:119, srow:2424 |
| 24873 | chr1 | 1167775 | 1168044 | wgEncodeRegTfbsClusteredV3 | USF1 | score:221, expCount:2, expNums:118,265, expScores:195,221, srow:2421 |
| 24873 | chr1 | 1167660 | 1168183 | wgEncodeRegTfbsClusteredV3 | HDAC1 | score:254, expCount:1, expNums:26, expScores:254, srow:2420 |
| 24873 | chr1 | 1168155 | 1168155 | phastConsElements100way | lod=14 | score:255, srow:4364 |
| 24873 | chr1 | 1167863 | 1168302 | wgEncodeRegTfbsClusteredV3 | CBX3 | score:262, expCount:1, expNums:211, expScores:262, srow:2422 |
| 24873 | chr1 | 1168040 | 1168041 | phastConsElements100way | lod=21 | score:295, srow:4356 |
| 24873 | chr1 | 1168055 | 1168056 | phastConsElements100way | lod=23 | score:304, srow:4358 |
| 24873 | chr1 | 1167959 | 1167963 | phastConsElements100way | lod=29 | score:327, srow:4350 |
| 24873 | chr1 | 1168142 | 1168143 | phastConsElements100way | lod=30 | score:330, srow:4362 |
| 24873 | chr1 | 1168178 | 1168179 | phastConsElements100way | lod=30 | score:330, srow:4367 |
| 24873 | chr1 | 1167956 | 1167957 | phastConsElements100way | lod=34 | score:343, srow:4349 |
| 24873 | chr1 | 1168004 | 1168008 | phastConsElements100way | lod=44 | score:368, srow:4353 |
| 24873 | chr1 | 1168136 | 1168140 | phastConsElements100way | lod=45 | score:370, srow:4361 |
| 24873 | chr1 | 1168157 | 1168161 | phastConsElements100way | lod=48 | score:377, srow:4365 |
| 24873 | chr1 | 1168031 | 1168038 | phastConsElements100way | lod=59 | score:397, srow:4355 |
| 24873 | chr1 | 1167968 | 1167981 | phastConsElements100way | lod=66 | score:408, srow:4351 |
| 24873 | chr1 | 1167944 | 1167951 | phastConsElements100way | lod=69 | score:413, srow:4348 |
| 24873 | chr1 | 1168145 | 1168152 | phastConsElements100way | lod=81 | score:429, srow:4363 |
| 24873 | chr1 | 1168163 | 1168176 | phastConsElements100way | lod=103 | score:452, srow:4366 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 24873 | cellmeth_recounts | PrEC: 76, LNCaP: 1639, DU145: 17 |  |
| 24873 | cellmeth_diffreps_PrECvsLNCaP | A=2094, B=5608, Length=1280, Event=Up, log2FC=1.42, padj=0 |  |
| 24873 | cellmeth_diffreps_PrECvsDU145 | A=2459, B=61, Length=2260, Event=Down, log2FC=-5.33, padj=0 |  |
| 24873 | cellmeth_diffreps_LNCaPvsDU145 | A=7565.63, B=74.83, Length=4420, Event=Down, log2FC=-6.66, padj=0 |  |
| 24873 | cellexp | id=ENSG00000176022, name=B3GALT6, PrEC=1331, str=1813, LNCaP=5670, str=4604, DU145=1966, str=1484 |  |
| 24873 | tcgameth | site:cg19945840, B=0.49, L=0.63, H=0.59 |  |
| 24873 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 24873 | tcgaexp | gene=B3GALT6, entrez=126792, pos=chr1:1167629-1170420(+), B=1240, L=2122, M=2201, H=1928 |  |
| 24873 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |