DMR 24944 chr1:6480301-6481000 (700bp)

DMR Stats
Positionchr1:6480301-6481000 (View on UCSC)
Width700bp
Genomic Contextpromoter
Nearest GenesHES2 (0bp away)
ANODEV p-value2.58454873997e-05
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
24944 HES2 150 uc001amw.3 chr1 6472498 6484730 - 700 100.0 0.2 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
24944 chr1 6479058 6480938 cpgIsland CpG: 180 length:1881, cpgNum:180, gcNum:1251, perCpg:19.1, perGc:66.5, obsExp:0.87, srow:329
24944 chr1 6478222 6481074 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:7, expNums:6,13,19,25,36,38,43, expScores:324,355,93,303,246,192,273, srow:14021
24944 chr1 6479606 6481190 wgEncodeRegDnaseClusteredV2 72 score:1000, srow:5029
24944 chr1 6480204 6480603 wgEncodeRegTfbsClusteredV3 FOS score:145, expCount:1, expNums:457, expScores:145, srow:14032
24944 chr1 6480040 6480409 wgEncodeRegTfbsClusteredV3 MAZ score:190, expCount:1, expNums:512, expScores:190, srow:14031
24944 chr1 6480651 6481054 wgEncodeRegTfbsClusteredV3 ZBTB7A score:201, expCount:1, expNums:247, expScores:201, srow:14036
24944 chr1 6480012 6480401 wgEncodeRegTfbsClusteredV3 MAX score:207, expCount:1, expNums:223, expScores:207, srow:14030
24944 chr1 6480707 6481076 wgEncodeRegTfbsClusteredV3 MAZ score:211, expCount:1, expNums:512, expScores:211, srow:14038
24944 chr1 6480719 6480978 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:218, expCount:1, expNums:232, expScores:218, srow:14040
24944 chr1 6480610 6481019 wgEncodeRegTfbsClusteredV3 MYC score:228, expCount:2, expNums:487,575, expScores:228,219, srow:14035
24944 chr1 6479876 6480391 wgEncodeRegTfbsClusteredV3 TFAP2C score:231, expCount:1, expNums:370, expScores:231, srow:14027
24944 chr1 6480998 6481001 phastConsElements100way lod=13 score:247, srow:22431
24944 chr1 6480839 6480845 phastConsElements100way lod=14 score:255, srow:22427
24944 chr1 6480232 6480675 wgEncodeRegTfbsClusteredV3 GATA2 score:263, expCount:1, expNums:459, expScores:263, srow:14033
24944 chr1 6480805 6480812 phastConsElements100way lod=16 score:268, srow:22425
24944 chr1 6480981 6480985 phastConsElements100way lod=16 score:268, srow:22430
24944 chr1 6480548 6480997 wgEncodeRegTfbsClusteredV3 POLR2A score:287, expCount:1, expNums:577, expScores:287, srow:14034
24944 chr1 6480899 6480907 phastConsElements100way lod=20 score:290, srow:22429
24944 chr1 6480821 6480836 phastConsElements100way lod=48 score:377, srow:22426
24944 chr1 6480850 6480869 phastConsElements100way lod=64 score:405, srow:22428
24944 chr1 6480713 6480954 wgEncodeRegTfbsClusteredV3 E2F6 score:493, expCount:1, expNums:215, expScores:493, srow:14039
24944 chr1 6479849 6480558 wgEncodeRegTfbsClusteredV3 TCF7L2 score:636, expCount:3, expNums:363,414,581, expScores:465,297,169, srow:14026
24944 chr1 6480697 6480993 wgEncodeRegTfbsClusteredV3 MAX score:677, expCount:2, expNums:223,576, expScores:677,216, srow:14037
24944 chr1 6480838 6480867 tfbsConsSites V$PAX4_04 score:733, zScore:1.82, srow:10237
24944 chr1 6480856 6480883 tfbsConsSites V$PAX5_02 score:767, zScore:1.75, srow:10242
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  • 25 of 53 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
24944 cellmeth_recounts PrEC: 76, LNCaP: 767, DU145: 0
24944 cellmeth_diffreps_PrECvsLNCaP A=136, B=683, Length=1140, Event=Up, log2FC=2.33, padj=0
24944 cellmeth_diffreps_PrECvsDU145 A=158, B=0, Length=1000, Event=Down, log2FC=-Inf, padj=0
24944 cellmeth_diffreps_LNCaPvsDU145 A=764.37, B=0, Length=1360, Event=Down, log2FC=-Inf, padj=0
24944 cellexp id=ENSG00000069812, name=HES2, PrEC=9039, str=21515, LNCaP=78, str=123, DU145=62, str=22
24944 tcgameth site:cg00644814, B=0.46, L=0.59, H=0.56
24944 tcgameth site:cg01501312, B=0.42, L=0.6, H=0.57
24944 tcgameth site:cg24864511, B=0.32, L=0.59, H=0.49
24944 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
24944 tcgaexp gene=HES2, entrez=54626, pos=chr1:6472498-6484730(-), B=322, L=373, M=321, H=299
24944 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305