DMR 25022 chr1:14057451-14057650 (200bp)

DMR Stats
Positionchr1:14057451-14057650 (View on UCSC)
Width200bp
Genomic Contextexon
Nearest GenesPRDM2 (0bp away)
ANODEV p-value2.87697924346e-05
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25022 PRDM2 265 uc001avg.3 chr1 14026735 14151574 + 200 100.0 0.11 0 0.0 E1 (0), I1 (0), E2 (0), I2 (22), E3 (59), I3 (19.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
25022 PRDM2 265 uc001avh.3 chr1 14031350 14114574 + 200 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (22), E3 (59), I3 (19.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
25022 PRDM2 265 uc001avi.3 chr1 14031350 14151574 + 200 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (22), E3 (59), I3 (19.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25022 chr1 14057165 14057661 wgEncodeRegTfbsClusteredV3 RUNX3 score:1000, expCount:1, expNums:109, expScores:310, srow:35543
25022 chr1 14057463 14057659 wgEncodeRegTfbsClusteredV3 SRF score:1000, expCount:1, expNums:113, expScores:1000, srow:35581
25022 chr1 14057046 14058070 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:18, expNums:104,105,123,124,130,131,306,307,326,328,330,332,334,336,338,340,585,602, expScores:1000,1000,273,625,435,763,1000,249,1000,757,622,938,299,878,527,820,1000,399, srow:35539
25022 chr1 14057454 14057687 wgEncodeRegTfbsClusteredV3 SPI1 score:1000, expCount:3, expNums:107,126,230, expScores:1000,1000,160, srow:35580
25022 chr1 14057412 14057727 wgEncodeRegTfbsClusteredV3 GABPA score:1000, expCount:3, expNums:91,180,220, expScores:1000,189,875, srow:35573
25022 chr1 14057226 14057775 wgEncodeRegDnaseClusteredV2 57 score:1000, srow:10805
25022 chr1 14057499 14057722 wgEncodeRegTfbsClusteredV3 ETS1 score:104, expCount:1, expNums:89, expScores:104, srow:35582
25022 chr1 14057237 14057836 wgEncodeRegTfbsClusteredV3 MYC score:111, expCount:1, expNums:600, expScores:111, srow:35552
25022 chr1 14057154 14057553 wgEncodeRegTfbsClusteredV3 WRNIP1 score:124, expCount:1, expNums:320, expScores:124, srow:35542
25022 chr1 14057304 14057583 wgEncodeRegTfbsClusteredV3 BCL11A score:138, expCount:1, expNums:82, expScores:138, srow:35559
25022 chr1 14057170 14057579 wgEncodeRegTfbsClusteredV3 STAT3 score:166, expCount:1, expNums:315, expScores:166, srow:35544
25022 chr1 14057238 14057507 wgEncodeRegTfbsClusteredV3 SMC3 score:172, expCount:1, expNums:313, expScores:172, srow:35553
25022 chr1 14057381 14057644 wgEncodeRegTfbsClusteredV3 RAD21 score:176, expCount:2, expNums:108,310, expScores:176,163, srow:35570
25022 chr1 14057385 14057708 wgEncodeRegTfbsClusteredV3 E2F6 score:188, expCount:1, expNums:215, expScores:188, srow:35571
25022 chr1 14057271 14057566 wgEncodeRegTfbsClusteredV3 MEF2C score:191, expCount:1, expNums:94, expScores:191, srow:35557
25022 chr1 14057254 14057489 wgEncodeRegTfbsClusteredV3 BATF score:201, expCount:1, expNums:81, expScores:201, srow:35555
25022 chr1 14057295 14057674 wgEncodeRegTfbsClusteredV3 CHD2 score:206, expCount:1, expNums:288, expScores:206, srow:35558
25022 chr1 14057514 14057817 wgEncodeRegTfbsClusteredV3 TCF3 score:212, expCount:1, expNums:117, expScores:212, srow:35583
25022 chr1 14057331 14057620 wgEncodeRegTfbsClusteredV3 MEF2A score:215, expCount:1, expNums:93, expScores:215, srow:35564
25022 chr1 14057426 14057805 wgEncodeRegTfbsClusteredV3 NFYB score:228, expCount:1, expNums:302, expScores:228, srow:35575
25022 chr1 14057380 14057799 wgEncodeRegTfbsClusteredV3 BCLAF1 score:228, expCount:1, expNums:84, expScores:228, srow:35569
25022 chr1 14057115 14057733 wgEncodeRegTfbsClusteredV3 YY1 score:249, expCount:3, expNums:119,128,133, expScores:249,189,165, srow:35541
25022 chr1 14057436 14057699 wgEncodeRegTfbsClusteredV3 EBF1 score:260, expCount:1, expNums:86, expScores:260, srow:35578
25022 chr1 14057327 14057720 wgEncodeRegTfbsClusteredV3 CTCF score:265, expCount:13, expNums:0,2,290,603,604,605,606,607,650,651,652,653,655, expScores:133,161,265,114,179,150,122,120,217,170,245,217,99, srow:35562
25022 chr1 14057311 14057720 wgEncodeRegTfbsClusteredV3 TBL1XR1 score:272, expCount:1, expNums:316, expScores:272, srow:35560
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  • 25 of 60 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25022 cellmeth_recounts PrEC: 3, LNCaP: 1, DU145: 0
25022 cellexp id=ENSG00000116731, name=PRDM2, PrEC=3050, str=4239, LNCaP=2463, str=2583, DU145=2002, str=2354
25022 tcgameth site:cg06604289, B=0.36, L=0.66, H=0.61
25022 tcgaexp gene=PRDM2, entrez=7799, pos=chr1:14026735-14151574(+), B=3734, L=3334, M=3193, H=3190
25022 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25022 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305