DMR 25162 chr1:26527701-26527950 (250bp)

DMR Stats
Positionchr1:26527701-26527950 (View on UCSC)
Width250bp
Genomic Context3' end
Nearest GenesCATSPER4 (0bp away)
ANODEV p-value4.06157805448e-06
FrequenciesBenign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25162 CATSPER4 478 uc009vsf.3 chr1 26517119 26529033 + 250 100.0 0.18 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (57.6), E9 (42.4), I9 (0), E10 (0) 0.0
25162 CATSPER4 478 uc010oey.1 chr1 26517119 26528094 + 250 100.0 0.31 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (57.6), E8 (42.4) 100.0
25162 CATSPER4 478 uc010oez.2 chr1 26517119 26529033 + 250 100.0 0.22 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (57.6), E9 (42.4), I9 (0), E10 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25162 chr1 26527671 26527915 wgEncodeRegTfbsClusteredV3 TEAD4 score:1000, expCount:1, expNums:240, expScores:1000, srow:72994
25162 chr1 26527540 26527999 wgEncodeRegTfbsClusteredV3 PHF8 score:1000, expCount:1, expNums:30, expScores:1000, srow:72977
25162 chr1 26527612 26527965 wgEncodeRegTfbsClusteredV3 EGR1 score:1000, expCount:2, expNums:138,216, expScores:136,1000, srow:72981
25162 chr1 26527317 26528096 wgEncodeRegTfbsClusteredV3 MAX score:1000, expCount:3, expNums:223,352,511, expScores:1000,131,559, srow:72967
25162 chr1 26527721 26528115 wgEncodeRegDnaseClusteredV2 79 score:1000, srow:21497
25162 chr1 26527683 26528006 wgEncodeRegTfbsClusteredV3 NFYA score:113, expCount:1, expNums:516, expScores:113, srow:72995
25162 chr1 26527911 26528150 wgEncodeRegTfbsClusteredV3 SP2 score:115, expCount:1, expNums:235, expScores:115, srow:73014
25162 chr1 26527748 26528007 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:126, expCount:1, expNums:232, expScores:126, srow:73006
25162 chr1 26527486 26527981 wgEncodeRegTfbsClusteredV3 HMGN3 score:137, expCount:1, expNums:501, expScores:137, srow:72974
25162 chr1 26527617 26527986 wgEncodeRegTfbsClusteredV3 BCLAF1 score:140, expCount:1, expNums:210, expScores:140, srow:72983
25162 chr1 26527705 26527940 wgEncodeRegTfbsClusteredV3 HDAC2 score:142, expCount:1, expNums:222, expScores:142, srow:72999
25162 chr1 26527730 26528005 wgEncodeRegTfbsClusteredV3 TAL1 score:147, expCount:1, expNums:542, expScores:147, srow:73004
25162 chr1 26527542 26527997 wgEncodeRegTfbsClusteredV3 CCNT2 score:148, expCount:1, expNums:476, expScores:148, srow:72978
25162 chr1 26527203 26527706 wgEncodeRegTfbsClusteredV3 CHD1 score:153, expCount:1, expNums:23, expScores:153, srow:72964
25162 chr1 26527636 26527951 wgEncodeRegTfbsClusteredV3 YY1 score:155, expCount:1, expNums:245, expScores:155, srow:72986
25162 chr1 26527756 26528075 wgEncodeRegTfbsClusteredV3 NFYB score:163, expCount:1, expNums:517, expScores:163, srow:73007
25162 chr1 26527659 26527958 wgEncodeRegTfbsClusteredV3 SP1 score:166, expCount:1, expNums:234, expScores:166, srow:72990
25162 chr1 26527561 26527960 wgEncodeRegTfbsClusteredV3 TBL1XR1 score:168, expCount:1, expNums:543, expScores:168, srow:72979
25162 chr1 26527666 26528101 wgEncodeRegTfbsClusteredV3 UBTF score:170, expCount:1, expNums:549, expScores:170, srow:72993
25162 chr1 26527700 26528099 wgEncodeRegTfbsClusteredV3 TAF1 score:174, expCount:1, expNums:238, expScores:174, srow:72996
25162 chr1 26527703 26527906 wgEncodeRegTfbsClusteredV3 SPI1 score:176, expCount:1, expNums:230, expScores:176, srow:72998
25162 chr1 26527717 26528006 wgEncodeRegTfbsClusteredV3 ZNF143 score:182, expCount:1, expNums:552, expScores:182, srow:73001
25162 chr1 26527650 26527925 wgEncodeRegTfbsClusteredV3 ELF1 score:189, expCount:1, expNums:217, expScores:189, srow:72988
25162 chr1 26527737 26528131 wgEncodeRegTfbsClusteredV3 JUN score:193, expCount:4, expNums:480,481,482,483, expScores:140,98,193,171, srow:73005
25162 chr1 26527774 26528109 wgEncodeRegTfbsClusteredV3 E2F4 score:194, expCount:1, expNums:494, expScores:194, srow:73008
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  • 25 of 60 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25162 cellmeth_recounts PrEC: 18, LNCaP: 1, DU145: 10
25162 cellmeth_diffreps_PrECvsLNCaP A=26, B=1, Length=380, Event=Down, log2FC=-4.7, padj=4.5123884431573e-06
25162 cellmeth_diffreps_PrECvsDU145 A=24, B=4, Length=200, Event=Down, log2FC=-2.58, padj=0.00252994212801597
25162 cellexp id=ENSG00000188782, name=CATSPER4, PrEC=0, str=0, LNCaP=2, str=1, DU145=1, str=0
25162 tcgaexp gene=CATSPER4, entrez=378807, pos=chr1:26517119-26529033(+), B=0, L=0, M=0, H=0
25162 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305