DMR 25168 chr1:27338751-27339200 (450bp)

DMR Stats
Positionchr1:27338751-27339200 (View on UCSC)
Width450bp
Genomic Contextpromoter
Nearest GenesFAM46B, BC016143 (0bp away)
ANODEV p-value0.00223749560521
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25168 FAM46B 504 uc010ofj.2 chr1 27331511 27339333 - 450 100.0 0.07 0 81.56 E1 (67.33), I1 (32.67), E2 (0) 0.0
25168 BC016143 494 uc021ojq.1 chr1 27145537 27392034 + 450 100.0 0.07 1 0.0 E1 (0), I1 (100), E2 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25168 chr1 27338880 27339441 cpgIsland CpG: 52 length:562, cpgNum:52, gcNum:330, perCpg:18.5, perGc:58.7, obsExp:1.08, srow:718
25168 chr1 27339078 27339530 wgEncodeRegTfbsClusteredV3 TAF1 score:1000, expCount:3, expNums:157,199,261, expScores:1000,254,144, srow:77905
25168 chr1 27338985 27339680 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:31, expNums:41,61,62,78,146,147,163,168,192,206,229,249,402,445,446,461,465,525,563,564,577,599,610,613,616,619,622,632,633,634,637, expScores:208,365,212,347,1000,1000,787,761,374,198,521,252,948,515,360,144,709,236,1000,1000,229,120,886,152,259,114,349,741,1000,214,148, srow:77901
25168 chr1 27339170 27339545 wgEncodeRegTfbsClusteredV3 TBP score:1000, expCount:4, expNums:359,412,452,545, expScores:1000,140,297,710, srow:77910
25168 chr1 27339066 27339255 wgEncodeRegDnaseClusteredV2 5 score:1000, srow:22154
25168 chr1 27339148 27339657 wgEncodeRegTfbsClusteredV3 SAP30 score:120, expCount:1, expNums:34, expScores:120, srow:77908
25168 chr1 27339194 27339629 wgEncodeRegTfbsClusteredV3 UBTF score:154, expCount:1, expNums:549, expScores:154, srow:77913
25168 chr1 27339180 27339539 wgEncodeRegTfbsClusteredV3 GTF2B score:164, expCount:1, expNums:499, expScores:164, srow:77911
25168 chr1 27339017 27339826 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:185, expCount:5, expNums:151,195,232,250,260, expScores:117,150,183,185,141, srow:77904
25168 chr1 27339144 27339639 wgEncodeRegTfbsClusteredV3 HMGN3 score:216, expCount:1, expNums:501, expScores:216, srow:77907
25168 chr1 27339185 27339686 wgEncodeRegTfbsClusteredV3 MXI1 score:229, expCount:4, expNums:353,397,441,513, expScores:168,163,229,187, srow:77912
25168 chr1 27339090 27339384 wgEncodeRegTfbsClusteredV3 PHF8 score:241, expCount:1, expNums:30, expScores:241, srow:77906
25168 chr1 27339070 27339073 phastConsElements100way lod=15 score:262, srow:111082
25168 chr1 27339004 27339579 wgEncodeRegTfbsClusteredV3 KDM5B score:284, expCount:1, expNums:31, expScores:284, srow:77902
25168 chr1 27339082 27339091 phastConsElements100way lod=19 score:285, srow:111083
25168 chr1 27338974 27338975 phastConsElements100way lod=21 score:295, srow:111077
25168 chr1 27339107 27339121 phastConsElements100way lod=23 score:304, srow:111084
25168 chr1 27339200 27339809 wgEncodeRegTfbsClusteredV3 SP4 score:312, expCount:1, expNums:155, expScores:312, srow:77914
25168 chr1 27339182 27339194 phastConsElements100way lod=30 score:330, srow:111086
25168 chr1 27338964 27338966 phastConsElements100way lod=32 score:337, srow:111075
25168 chr1 27338971 27338972 phastConsElements100way lod=36 score:348, srow:111076
25168 chr1 27339144 27339158 phastConsElements100way lod=40 score:359, srow:111085
25168 chr1 27339159 27339678 wgEncodeRegTfbsClusteredV3 SIN3A score:381, expCount:1, expNums:357, expScores:381, srow:77909
25168 chr1 27338980 27338984 phastConsElements100way lod=55 score:390, srow:111078
25168 chr1 27339049 27339057 phastConsElements100way lod=55 score:390, srow:111081
  • Page 1 of 3
  • 25 of 52 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25168 cellmeth_recounts PrEC: 87, LNCaP: 457, DU145: 0
25168 cellmeth_diffreps_PrECvsLNCaP A=132, B=634, Length=1020, Event=Up, log2FC=2.26, padj=0
25168 cellmeth_diffreps_PrECvsDU145 A=130, B=0, Length=600, Event=Down, log2FC=-Inf, padj=0
25168 cellmeth_diffreps_LNCaPvsDU145 A=678.84, B=0.94, Length=1120, Event=Down, log2FC=-9.5, padj=0
25168 cellexp id=ENSG00000158246, name=FAM46B, PrEC=595, str=94, LNCaP=5, str=3, DU145=845, str=648
25168 tcgameth site:cg16352283, B=0.5, L=0.6, H=0.61
25168 tcgameth site:cg20486246, B=0.45, L=0.4, H=0.46
25168 tcgaexp gene=FAM46B, entrez=115572, pos=chr1:27331511-27339333(-), B=1385, L=762, M=507, H=358
25168 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305