DMR 25199 chr1:32409801-32410800 (1000bp)

DMR Stats
Positionchr1:32409801-32410800 (View on UCSC)
Width1000bp
Genomic Contextintergenic
Nearest GenesPTP4A2 (5812bp away)
ANODEV p-value4.11807130212e-07
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25199 chr1 32410189 32410630 cpgIsland CpG: 39 length:442, cpgNum:39, gcNum:294, perCpg:17.6, perGc:66.5, obsExp:0.82, srow:801
25199 chr1 32410063 32410744 wgEncodeRegTfbsClusteredV3 PHF8 score:1000, expCount:1, expNums:30, expScores:1000, srow:93728
25199 chr1 32410480 32410650 wgEncodeRegTfbsClusteredV3 BHLHE40 score:1000, expCount:1, expNums:472, expScores:1000, srow:93750
25199 chr1 32409928 32410177 wgEncodeRegTfbsClusteredV3 TEAD4 score:1000, expCount:2, expNums:160,240, expScores:297,1000, srow:93694
25199 chr1 32409991 32410251 wgEncodeRegTfbsClusteredV3 EGR1 score:1000, expCount:2, expNums:87,216, expScores:361,1000, srow:93714
25199 chr1 32410289 32410798 wgEncodeRegTfbsClusteredV3 E2F6 score:1000, expCount:3, expNums:215,386,495, expScores:956,290,1000, srow:93740
25199 chr1 32409905 32410340 wgEncodeRegTfbsClusteredV3 MAZ score:1000, expCount:3, expNums:297,396,512, expScores:798,600,1000, srow:93683
25199 chr1 32409821 32410363 wgEncodeRegTfbsClusteredV3 ELF1 score:1000, expCount:3, expNums:50,88,217, expScores:308,940,1000, srow:93667
25199 chr1 32409642 32410795 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:53, expNums:22,32,61,62,104,105,123,124,130,131,146,147,163,168,206,207,228,229,249,256,283,306,307,308,326,328,330,332,334,336,338,340,362,366,402,403,465,520,521,522,523,524,525,526,577,583,585,596,602,610,613,622,637, expScores:128,410,796,509,892,1000,909,1000,592,1000,931,1000,548,944,237,542,715,1000,191,263,440,1000,857,579,1000,1000,1000,1000,1000,1000,1000,1000,227,202,551,678,235,641,587,702,785,238,949,434,229,734,788,257,639,489,519,1000,134, srow:93657
25199 chr1 32409799 32410473 wgEncodeRegTfbsClusteredV3 TAF1 score:1000, expCount:7, expNums:115,127,132,157,169,238,254, expScores:701,521,291,1000,333,661,170, srow:93665
25199 chr1 32409901 32410315 wgEncodeRegDnaseClusteredV2 104 score:1000, srow:26291
25199 chr1 32410386 32410695 wgEncodeRegDnaseClusteredV2 105 score:1000, srow:26292
25199 chr1 32409969 32410212 wgEncodeRegTfbsClusteredV3 JUN score:122, expCount:1, expNums:480, expScores:122, srow:93707
25199 chr1 32409925 32410140 wgEncodeRegTfbsClusteredV3 MEF2A score:130, expCount:1, expNums:224, expScores:130, srow:93693
25199 chr1 32409982 32410237 wgEncodeRegTfbsClusteredV3 NANOG score:131, expCount:1, expNums:143, expScores:131, srow:93710
25199 chr1 32409994 32410223 wgEncodeRegTfbsClusteredV3 FOSL1 score:132, expCount:1, expNums:219, expScores:132, srow:93718
25199 chr1 32409990 32410731 wgEncodeRegTfbsClusteredV3 SAP30 score:132, expCount:1, expNums:34, expScores:123, srow:93713
25199 chr1 32409760 32410359 wgEncodeRegTfbsClusteredV3 CTBP2 score:133, expCount:1, expNums:348, expScores:133, srow:93660
25199 chr1 32410096 32410295 wgEncodeRegTfbsClusteredV3 SRF score:135, expCount:1, expNums:236, expScores:135, srow:93736
25199 chr1 32409943 32410472 wgEncodeRegTfbsClusteredV3 TFAP2A score:135, expCount:1, expNums:369, expScores:135, srow:93698
25199 chr1 32410095 32410291 wgEncodeRegTfbsClusteredV3 RAD21 score:145, expCount:2, expNums:108,231, expScores:145,119, srow:93735
25199 chr1 32409931 32410286 wgEncodeRegTfbsClusteredV3 STAT2 score:148, expCount:1, expNums:540, expScores:148, srow:93696
25199 chr1 32410507 32410750 wgEncodeRegTfbsClusteredV3 EGR1 score:149, expCount:1, expNums:216, expScores:149, srow:93751
25199 chr1 32410412 32410755 wgEncodeRegTfbsClusteredV3 MXI1 score:149, expCount:1, expNums:353, expScores:149, srow:93744
25199 chr1 32409761 32410196 wgEncodeRegTfbsClusteredV3 CHD1 score:156, expCount:1, expNums:287, expScores:156, srow:93661
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  • 25 of 115 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25199 cellmeth_recounts PrEC: 33, LNCaP: 271, DU145: 4
25199 cellmeth_diffreps_PrECvsLNCaP A=29, B=205, Length=1000, Event=Up, log2FC=2.82, padj=0
25199 cellmeth_diffreps_PrECvsDU145 A=30, B=0, Length=400, Event=Down, log2FC=-Inf, padj=1.21014621758047e-08
25199 cellmeth_diffreps_PrECvsDU145 A=14, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.000506195974236337
25199 cellmeth_diffreps_PrECvsDU145 A=28, B=5, Length=200, Event=Down, log2FC=-2.49, padj=0.00112599535425937
25199 cellmeth_diffreps_LNCaPvsDU145 A=244.81, B=7.48, Length=1280, Event=Down, log2FC=-5.03, padj=0
25199 cellexp id=ENSG00000184007, name=PTP4A2, PrEC=10620, str=6229, LNCaP=6667, str=7060, DU145=21329, str=22046
25199 tcgameth site:cg00925616, B=0.32, L=0.65, H=0.64
25199 tcgameth site:cg04881103, B=0.23, L=0.53, H=0.48
25199 tcgameth site:cg11756095, B=0.25, L=0.63, H=0.6
25199 tcgameth site:cg17942618, B=0.7, L=0.74, H=0.73
25199 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305