DMR 25210 chr1:33772101-33773000 (900bp)

DMR Stats
Positionchr1:33772101-33773000 (View on UCSC)
Width900bp
Genomic Context3' end
Nearest GenesA3GALT2 (0bp away)
ANODEV p-value0.000887429651493
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25210 A3GALT2 613 uc031plq.1 chr1 33772367 33786699 - 634 70.44 0.18 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (70.44) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25210 chr1 33772147 33773104 cpgIsland CpG: 123 length:958, cpgNum:123, gcNum:680, perCpg:25.7, perGc:71, obsExp:1.02, srow:842
25210 chr1 33772667 33772996 wgEncodeRegTfbsClusteredV3 MAX score:158, expCount:2, expNums:352,460, expScores:158,130, srow:99167
25210 chr1 33772270 33772593 wgEncodeRegTfbsClusteredV3 BACH1 score:180, expCount:1, expNums:341, expScores:180, srow:99166
25210 chr1 33772941 33772941 phastConsElements100way lod=13 score:247, srow:138837
25210 chr1 33772659 33772659 phastConsElements100way lod=14 score:255, srow:138813
25210 chr1 33772923 33772924 phastConsElements100way lod=14 score:255, srow:138834
25210 chr1 33772841 33772842 phastConsElements100way lod=15 score:262, srow:138829
25210 chr1 33772929 33772930 phastConsElements100way lod=15 score:262, srow:138835
25210 chr1 33772545 33772546 phastConsElements100way lod=17 score:274, srow:138805
25210 chr1 33772746 33772747 phastConsElements100way lod=17 score:274, srow:138821
25210 chr1 33772374 33772377 phastConsElements100way lod=18 score:280, srow:138797
25210 chr1 33772851 33772854 phastConsElements100way lod=19 score:285, srow:138830
25210 chr1 33772917 33772918 phastConsElements100way lod=19 score:285, srow:138833
25210 chr1 33772995 33772996 phastConsElements100way lod=19 score:285, srow:138842
25210 chr1 33772815 33772819 phastConsElements100way lod=20 score:290, srow:138827
25210 chr1 33772436 33772440 phastConsElements100way lod=21 score:295, srow:138800
25210 chr1 33772707 33772708 phastConsElements100way lod=21 score:295, srow:138818
25210 chr1 33772593 33772597 phastConsElements100way lod=23 score:304, srow:138809
25210 chr1 33772623 33772624 phastConsElements100way lod=23 score:304, srow:138811
25210 chr1 33772665 33772666 phastConsElements100way lod=24 score:308, srow:138814
25210 chr1 33772671 33772672 phastConsElements100way lod=25 score:312, srow:138815
25210 chr1 33772935 33772936 phastConsElements100way lod=25 score:312, srow:138836
25210 chr1 33772420 33772426 phastConsElements100way lod=26 score:316, srow:138799
25210 chr1 33772757 33772759 phastConsElements100way lod=26 score:316, srow:138823
25210 chr1 33772779 33772780 phastConsElements100way lod=26 score:316, srow:138825
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  • 25 of 67 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25210 cellmeth_recounts PrEC: 43, LNCaP: 5495, DU145: 41
25210 cellmeth_diffreps_PrECvsLNCaP A=75, B=4509, Length=1400, Event=Up, log2FC=5.91, padj=0
25210 cellmeth_diffreps_PrECvsDU145 A=24, B=4, Length=280, Event=Down, log2FC=-2.58, padj=0.00252994212801597
25210 cellmeth_diffreps_LNCaPvsDU145 A=4840.64, B=36.48, Length=1600, Event=Down, log2FC=-7.05, padj=0
25210 cellexp id=ENSG00000184389, name=A3GALT2, PrEC=1, str=0, LNCaP=3, str=1, DU145=0, str=1
25210 cellexp id=ENSG00000225313, name=RP11-415J8.3, PrEC=13, str=103, LNCaP=12, str=12, DU145=9, str=11
25210 tcgameth site:cg00069002, B=0.39, L=0.52, H=0.51
25210 tcgameth site:cg08864344, B=0.45, L=0.65, H=0.63
25210 tcgameth site:cg13870102, B=0.26, L=0.46, H=0.46
25210 tcgameth site:cg18964375, B=0.72, L=0.83, H=0.81
25210 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305