DMR 25290 chr1:45251751-45252450 (700bp)
| DMR Stats | |
|---|---|
| Position | chr1:45251751-45252450 (View on UCSC) |
| Width | 700bp |
| Genomic Context | exon |
| Nearest Genes | BEST4 (0bp away) |
| ANODEV p-value | 3.52872498114e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25290 | BEST4 | 796 | uc001cmm.3 | chr1 | 45249257 | 45253426 | - | 700 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (11.86), E3 (33.43), I3 (33.57), E4 (21.43), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25290 | chr1 | 45251278 | 45252330 | oreganno | OREG0013447 | id:OREG0013447, srow:775 |
| 25290 | chr1 | 45251963 | 45252292 | cpgIsland | CpG: 38 | length:330, cpgNum:38, gcNum:239, perCpg:23, perGc:72.4, obsExp:0.88, srow:1034 |
| 25290 | chr1 | 45251808 | 45252074 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:1000, expCount:11, expNums:108,149,193,231,264,280,310,355,448,466,529, expScores:526,1000,1000,1000,1000,268,310,1000,806,1000,359, srow:128524 |
| 25290 | chr1 | 45251732 | 45252344 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:98, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,262,290,463,493,595,597,598,601,603,604,605,606,607,609,612,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,648,649,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:724,1000,1000,931,1000,1000,1000,1000,1000,147,786,1000,1000,1000,1000,455,400,200,939,924,1000,692,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,956,848,561,1000,1000,595,711,553,798,712,1000,1000,931,1000,1000,1000,1000,1000,1000,1000,1000,324,1000,222,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,876,1000,981,1000,335,1000,1000,1000,1000,1000,1000,1000,1000,1000,302,405,1000,1000,925,1000,1000,1000,1000,1000, srow:128510 |
| 25290 | chr1 | 45251821 | 45252575 | wgEncodeRegDnaseClusteredV2 | 116 | score:1000, srow:35992 |
| 25290 | chr1 | 45252157 | 45252164 | tfbsConsSites | V$MZF1_01 | score:1000, zScore:2.23, srow:110741 |
| 25290 | chr1 | 45251827 | 45252166 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:139, expCount:1, expNums:127, expScores:139, srow:128527 |
| 25290 | chr1 | 45251849 | 45252152 | wgEncodeRegTfbsClusteredV3 | FOXP2 | score:140, expCount:1, expNums:251, expScores:140, srow:128529 |
| 25290 | chr1 | 45251771 | 45252146 | wgEncodeRegTfbsClusteredV3 | TBP | score:140, expCount:1, expNums:359, expScores:140, srow:128513 |
| 25290 | chr1 | 45251824 | 45252172 | wgEncodeRegTfbsClusteredV3 | NR3C1 | score:142, expCount:2, expNums:56,58, expScores:128,142, srow:128526 |
| 25290 | chr1 | 45251861 | 45252385 | wgEncodeRegTfbsClusteredV3 | ZBTB33 | score:149, expCount:2, expNums:120,246, expScores:130,149, srow:128530 |
| 25290 | chr1 | 45251906 | 45252261 | wgEncodeRegTfbsClusteredV3 | TAF7 | score:158, expCount:1, expNums:158, expScores:158, srow:128535 |
| 25290 | chr1 | 45251782 | 45252111 | wgEncodeRegTfbsClusteredV3 | IRF4 | score:163, expCount:1, expNums:92, expScores:163, srow:128516 |
| 25290 | chr1 | 45252036 | 45252345 | wgEncodeRegTfbsClusteredV3 | PAX5 | score:170, expCount:1, expNums:101, expScores:170, srow:128540 |
| 25290 | chr1 | 45251778 | 45252181 | wgEncodeRegTfbsClusteredV3 | ZBTB7A | score:178, expCount:1, expNums:247, expScores:178, srow:128515 |
| 25290 | chr1 | 45251872 | 45252481 | wgEncodeRegTfbsClusteredV3 | SP4 | score:210, expCount:1, expNums:155, expScores:210, srow:128531 |
| 25290 | chr1 | 45251792 | 45252177 | wgEncodeRegTfbsClusteredV3 | YY1 | score:214, expCount:3, expNums:119,162,203, expScores:199,214,165, srow:128520 |
| 25290 | chr1 | 45251783 | 45251784 | phastConsElements100way | lod=12 | score:240, srow:198936 |
| 25290 | chr1 | 45251728 | 45252453 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:244, expCount:1, expNums:357, expScores:177, srow:128509 |
| 25290 | chr1 | 45251882 | 45252205 | wgEncodeRegTfbsClusteredV3 | ZEB1 | score:245, expCount:1, expNums:121, expScores:245, srow:128532 |
| 25290 | chr1 | 45251791 | 45252375 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:248, expCount:2, expNums:215,495, expScores:155,248, srow:128519 |
| 25290 | chr1 | 45251765 | 45251766 | phastConsElements100way | lod=15 | score:262, srow:198932 |
| 25290 | chr1 | 45251817 | 45252104 | wgEncodeRegTfbsClusteredV3 | TCF12 | score:267, expCount:2, expNums:116,159, expScores:267,140, srow:128525 |
| 25290 | chr1 | 45251795 | 45251796 | phastConsElements100way | lod=16 | score:268, srow:198939 |
| 25290 | chr1 | 45251802 | 45252416 | wgEncodeRegTfbsClusteredV3 | MXI1 | score:287, expCount:3, expNums:298,353,441, expScores:287,170,268, srow:128523 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25290 | cellmeth_recounts | PrEC: 15, LNCaP: 117, DU145: 0 |  |
| 25290 | cellmeth_diffreps_PrECvsLNCaP | A=21, B=86, Length=460, Event=Up, log2FC=2.03, padj=6.10668622411807e-09 |  |
| 25290 | cellmeth_diffreps_PrECvsDU145 | A=22, B=0, Length=400, Event=Down, log2FC=-Inf, padj=2.6934033431747e-06 |  |
| 25290 | cellmeth_diffreps_LNCaPvsDU145 | A=94.08, B=0, Length=600, Event=Down, log2FC=-Inf, padj=0 |  |
| 25290 | cellexp | id=ENSG00000142959, name=BEST4, PrEC=75, str=28, LNCaP=25, str=5, DU145=32, str=11 |  |
| 25290 | tcgameth | site:cg06170941, B=0.33, L=0.47, H=0.49 |  |
| 25290 | tcgaexp | gene=BEST4, entrez=266675, pos=chr1:45249257-45253426(-), B=15, L=12, M=8, H=6 |  |
| 25290 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |