DMR 25353 chr1:53308701-53309450 (750bp)

DMR Stats
Positionchr1:53308701-53309450 (View on UCSC)
Width750bp
Genomic Contextintron
Nearest GenesZYG11A (0bp away)
ANODEV p-value8.85617084792e-06
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25353 ZYG11A 891 uc001cuk.2 chr1 53308183 53360247 + 750 100.0 0.7 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
25353 ZYG11A 891 uc001cul.2 chr1 53308183 53360247 + 750 100.0 0.91 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25353 chr1 53308295 53309262 cpgIsland CpG: 112 length:968, cpgNum:112, gcNum:653, perCpg:23.1, perGc:67.5, obsExp:1.02, srow:1127
25353 chr1 53308378 53309309 wgEncodeRegTfbsClusteredV3 PHF8 score:1000, expCount:1, expNums:30, expScores:1000, srow:143301
25353 chr1 53308195 53308788 wgEncodeRegTfbsClusteredV3 E2F6 score:1000, expCount:3, expNums:215,386,495, expScores:1000,571,1000, srow:143264
25353 chr1 53307987 53309513 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:38, expNums:32,61,62,78,104,105,130,131,168,206,228,229,259,283,306,307,328,330,332,334,338,340,366,402,403,520,521,522,523,524,525,577,596,599,613,622,632,633, expScores:295,1000,789,211,458,498,469,709,491,321,220,902,239,122,420,134,682,523,693,254,421,504,173,432,264,310,298,293,598,190,644,152,244,161,182,244,342,366, srow:143256
25353 chr1 53308351 53308959 wgEncodeRegTfbsClusteredV3 ZBTB33 score:1000, expCount:4, expNums:71,120,204,246, expScores:188,957,374,1000, srow:143299
25353 chr1 53308126 53308963 wgEncodeRegTfbsClusteredV3 TCF7L2 score:1000, expCount:5, expNums:367,413,414,573,581, expScores:492,350,297,681,167, srow:143257
25353 chr1 53308158 53309054 wgEncodeRegTfbsClusteredV3 MAX score:1000, expCount:9, expNums:223,278,296,352,395,439,460,511,576, expScores:213,503,771,203,824,185,745,1000,531, srow:143260
25353 chr1 53308682 53308917 wgEncodeRegTfbsClusteredV3 CTCF score:127, expCount:3, expNums:605,607,609, expScores:117,125,127, srow:143309
25353 chr1 53308634 53309163 wgEncodeRegTfbsClusteredV3 TFAP2A score:142, expCount:1, expNums:369, expScores:142, srow:143308
25353 chr1 53308630 53309145 wgEncodeRegTfbsClusteredV3 TFAP2C score:148, expCount:1, expNums:370, expScores:148, srow:143307
25353 chr1 53308340 53308709 wgEncodeRegTfbsClusteredV3 BCLAF1 score:164, expCount:1, expNums:210, expScores:164, srow:143297
25353 chr1 53308692 53309067 wgEncodeRegTfbsClusteredV3 TBP score:184, expCount:1, expNums:545, expScores:184, srow:143312
25353 chr1 53308979 53309211 wgEncodeRegTfbsClusteredV3 CTCF score:192, expCount:2, expNums:597,604, expScores:125,192, srow:143316
25353 chr1 53308783 53309286 wgEncodeRegTfbsClusteredV3 CHD1 score:208, expCount:1, expNums:23, expScores:208, srow:143315
25353 chr1 53308716 53308975 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:216, expCount:1, expNums:232, expScores:216, srow:143314
25353 chr1 53308486 53309145 wgEncodeRegTfbsClusteredV3 SMARCB1 score:222, expCount:1, expNums:391, expScores:222, srow:143306
25353 chr1 53308690 53308925 wgEncodeRegTfbsClusteredV3 ATF3 score:231, expCount:1, expNums:208, expScores:231, srow:143310
25353 chr1 53308713 53309181 wgEncodeRegTfbsClusteredV3 MYC score:247, expCount:4, expNums:486,487,620,624, expScores:115,171,149,247, srow:143313
25353 chr1 53308324 53308777 wgEncodeRegTfbsClusteredV3 TAF1 score:258, expCount:2, expNums:169,238, expScores:184,258, srow:143295
25353 chr1 53308486 53308995 wgEncodeRegTfbsClusteredV3 SAP30 score:259, expCount:1, expNums:34, expScores:259, srow:143305
25353 chr1 53308195 53308890 wgEncodeRegTfbsClusteredV3 HMGN3 score:284, expCount:1, expNums:501, expScores:156, srow:143265
25353 chr1 53308691 53309715 wgEncodeRegTfbsClusteredV3 UBTF score:293, expCount:2, expNums:548,549, expScores:160,293, srow:143311
25353 chr1 53309095 53309370 wgEncodeRegTfbsClusteredV3 SPI1 score:317, expCount:1, expNums:107, expScores:317, srow:143317
25353 chr1 53307952 53308894 wgEncodeRegTfbsClusteredV3 KDM5B score:319, expCount:1, expNums:31, expScores:280, srow:143255
25353 chr1 53309422 53309777 wgEncodeRegTfbsClusteredV3 GTF3C2 score:326, expCount:1, expNums:415, expScores:326, srow:143320
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  • 25 of 37 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25353 cellmeth_recounts PrEC: 5, LNCaP: 238, DU145: 0
25353 cellmeth_diffreps_PrECvsLNCaP A=6, B=199, Length=920, Event=Up, log2FC=5.05, padj=0
25353 cellmeth_diffreps_PrECvsDU145 A=15, B=0, Length=320, Event=Down, log2FC=-Inf, padj=0.000269565104641442
25353 cellmeth_diffreps_LNCaPvsDU145 A=213.81, B=0, Length=1000, Event=Down, log2FC=-Inf, padj=0
25353 cellexp id=ENSG00000203995, name=ZYG11A, PrEC=38, str=7, LNCaP=38, str=77, DU145=814, str=921
25353 tcgameth site:cg00397635, B=0.25, L=0.61, H=0.52
25353 tcgameth site:cg06784991, B=0.23, L=0.46, H=0.44
25353 tcgameth site:cg18184411, B=0.28, L=0.56, H=0.49
25353 tcgameth site:cg24466241, B=0.25, L=0.5, H=0.42
25353 tcgaexp gene=ZYG11A, entrez=440590, pos=chr1:53308183-53360247(+), B=115, L=208, M=185, H=295
25353 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305