DMR 25868 chr1:228246551-228247200 (650bp)
| DMR Stats | |
|---|---|
| Position | chr1:228246551-228247200 (View on UCSC) |
| Width | 650bp |
| Genomic Context | 3' end |
| Nearest Genes | WNT3A (0bp away) |
| ANODEV p-value | 0.00212354790097 |
| Frequencies | Benign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25868 | WNT3A | 2661 | uc001hrp.2 | chr1 | 228194723 | 228248168 | + | 650 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (20.92), E4 (73.23), I4 (6), E5 (0) | 4.92 |
| 25868 | WNT3A | 2661 | uc001hrq.2 | chr1 | 228194723 | 228248972 | + | 650 | 100.0 | 0.03 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (20.92), E4 (79.08) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25868 | chr1 | 228246632 | 228247197 | cpgIsland | CpG: 66 | length:566, cpgNum:66, gcNum:392, perCpg:23.3, perGc:69.3, obsExp:0.97, srow:2286 |
| 25868 | chr1 | 228247186 | 228247955 | wgEncodeRegDnaseClusteredV2 | 78 | score:1000, srow:109054 |
| 25868 | chr1 | 228246709 | 228246715 | tfbsConsSites | V$NKX25_01 | score:1000, zScore:2.58, srow:475266 |
| 25868 | chr1 | 228246971 | 228247314 | wgEncodeRegTfbsClusteredV3 | GABPA | score:185, expCount:1, expNums:140, expScores:185, srow:401208 |
| 25868 | chr1 | 228246827 | 228247290 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:243, expCount:1, expNums:78, expScores:243, srow:401206 |
| 25868 | chr1 | 228246932 | 228247527 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:252, expCount:1, expNums:368, expScores:252, srow:401207 |
| 25868 | chr1 | 228246481 | 228246775 | wgEncodeRegDnaseClusteredV2 | 4 | score:272, srow:109052 |
| 25868 | chr1 | 228246873 | 228246874 | phastConsElements100way | lod=27 | score:320, srow:810219 |
| 25868 | chr1 | 228247137 | 228247138 | phastConsElements100way | lod=31 | score:333, srow:810234 |
| 25868 | chr1 | 228246822 | 228246823 | phastConsElements100way | lod=33 | score:340, srow:810217 |
| 25868 | chr1 | 228246789 | 228246790 | phastConsElements100way | lod=46 | score:373, srow:810215 |
| 25868 | chr1 | 228246909 | 228246913 | phastConsElements100way | lod=57 | score:394, srow:810221 |
| 25868 | chr1 | 228246963 | 228246967 | phastConsElements100way | lod=72 | score:417, srow:810226 |
| 25868 | chr1 | 228247014 | 228247018 | phastConsElements100way | lod=85 | score:433, srow:810230 |
| 25868 | chr1 | 228246978 | 228246985 | phastConsElements100way | lod=94 | score:443, srow:810228 |
| 25868 | chr1 | 228246969 | 228246976 | phastConsElements100way | lod=101 | score:450, srow:810227 |
| 25868 | chr1 | 228246930 | 228246937 | phastConsElements100way | lod=109 | score:458, srow:810223 |
| 25868 | chr1 | 228246951 | 228246961 | phastConsElements100way | lod=122 | score:469, srow:810225 |
| 25868 | chr1 | 228246939 | 228246949 | phastConsElements100way | lod=151 | score:490, srow:810224 |
| 25868 | chr1 | 228246774 | 228246787 | phastConsElements100way | lod=162 | score:497, srow:810214 |
| 25868 | chr1 | 228247050 | 228247066 | phastConsElements100way | lod=179 | score:507, srow:810232 |
| 25868 | chr1 | 228246280 | 228247306 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:512, expCount:5, expNums:15,21,36,38,40, expScores:302,404,346,210,304, srow:401205 |
| 25868 | chr1 | 228246915 | 228246928 | phastConsElements100way | lod=199 | score:517, srow:810222 |
| 25868 | chr1 | 228246987 | 228247012 | phastConsElements100way | lod=267 | score:547, srow:810229 |
| 25868 | chr1 | 228246756 | 228246772 | phastConsElements100way | lod=271 | score:548, srow:810213 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25868 | cellmeth_recounts | PrEC: 77, LNCaP: 348, DU145: 12 |  |
| 25868 | cellmeth_diffreps_PrECvsLNCaP | A=75, B=235, Length=640, Event=Up, log2FC=1.65, padj=0 |  |
| 25868 | cellmeth_diffreps_PrECvsDU145 | A=115, B=9, Length=760, Event=Down, log2FC=-3.68, padj=0 |  |
| 25868 | cellmeth_diffreps_LNCaPvsDU145 | A=308.95, B=8.42, Length=1120, Event=Down, log2FC=-5.2, padj=0 |  |
| 25868 | cellexp | id=ENSG00000154342, name=WNT3A, PrEC=0, str=14, LNCaP=1, str=0, DU145=10, str=5 |  |
| 25868 | tcgameth | site:cg09075558, B=0.5, L=0.57, H=0.61 |  |
| 25868 | tcgameth | site:cg09511896, B=0.36, L=0.48, H=0.48 |  |
| 25868 | tcgameth | site:cg12359809, B=0.49, L=0.63, H=0.63 |  |
| 25868 | tcgameth | site:cg23663760, B=0.24, L=0.27, H=0.26 |  |
| 25868 | tcgaexp | gene=WNT3A, entrez=89780, pos=chr1:228194723-228248972(+), B=193, L=87, M=92, H=58 |  |