DMR 26379 chr2:105473001-105473300 (300bp)

DMR Stats
Positionchr2:105473001-105473300 (View on UCSC)
Width300bp
Genomic Context3' end
Nearest GenesPOU3F3 (0bp away)
ANODEV p-value0.000287676041294
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26379 POU3F3 16779 uc010ywg.2 chr2 105471969 105473471 + 300 100.0 0.05 0 0.0 E1 (100) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26379 chr2 105468852 105473488 cpgIsland CpG: 334 length:4637, cpgNum:334, gcNum:2430, perCpg:14.4, perGc:52.4, obsExp:1.05, srow:15326
26379 chr2 105471960 105474313 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:9, expNums:6,15,17,19,21,36,38,40,43, expScores:705,624,187,152,875,270,234,857,396, srow:2251874
26379 chr2 105473245 105473251 tfbsConsSites V$NKX25_01 score:1000, zScore:2.58, srow:2723352
26379 chr2 105472936 105473535 wgEncodeRegTfbsClusteredV3 CTBP2 score:141, expCount:1, expNums:348, expScores:141, srow:2251877
26379 chr2 105472912 105473527 wgEncodeRegTfbsClusteredV3 CHD1 score:305, expCount:1, expNums:4, expScores:305, srow:2251876
26379 chr2 105473172 105473173 phastConsElements100way lod=35 score:345, srow:4710313
26379 chr2 105472837 105473463 wgEncodeRegTfbsClusteredV3 SUZ12 score:417, expCount:2, expNums:358,578, expScores:113,417, srow:2251875
26379 chr2 105472941 105473495 wgEncodeRegDnaseClusteredV2 40 score:464, srow:640403
26379 chr2 105473230 105473245 phastConsElements100way lod=187 score:511, srow:4710315
26379 chr2 105473247 105473266 phastConsElements100way lod=208 score:522, srow:4710316
26379 chr2 105473175 105473227 phastConsElements100way lod=652 score:635, srow:4710314
26379 chr2 105473104 105473170 phastConsElements100way lod=824 score:658, srow:4710312
26379 chr2 105472926 105473005 phastConsElements100way lod=1012 score:678, srow:4710310
26379 chr2 105473268 105473365 phastConsElements100way lod=1100 score:687, srow:4710317
26379 chr2 105473007 105473101 phastConsElements100way lod=1130 score:689, srow:4710311
26379 chr2 105473235 105473264 tfbsConsSites V$HOX13_01 score:705, zScore:1.68, srow:2723351
26379 chr2 105472992 105473021 tfbsConsSites V$PAX4_04 score:729, zScore:1.75, srow:2723345
26379 chr2 105473037 105473052 tfbsConsSites V$GRE_C score:809, zScore:1.68, srow:2723346
26379 chr2 105473041 105473058 tfbsConsSites V$CMYB_01 score:815, zScore:2.14, srow:2723347
26379 chr2 105473111 105473120 tfbsConsSites V$HMX1_01 score:840, zScore:2.18, srow:2723349
26379 chr2 105473110 105473119 tfbsConsSites V$NKX22_01 score:880, zScore:1.78, srow:2723348
26379 chr2 105473159 105473169 tfbsConsSites V$EVI1_02 score:883, zScore:2.4, srow:2723350
26379 chr2 105473281 105473298 tfbsConsSites V$NF1_Q6 score:904, zScore:2.19, srow:2723353
26379 chr2 105473006 105473006 cosmic COSM121614 srow:664968
26379 chr2 105473009 105473009 cosmic COSM1398563 srow:664969
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  • 25 of 44 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26379 cellmeth_recounts PrEC: 1, LNCaP: 1155, DU145: 33
26379 cellmeth_diffreps_PrECvsLNCaP A=34, B=3498, Length=4060, Event=Up, log2FC=6.68, padj=0
26379 cellmeth_diffreps_PrECvsDU145 A=1, B=24, Length=300, Event=Up, log2FC=4.58, padj=2.0670567223746e-05
26379 cellmeth_diffreps_LNCaPvsDU145 A=3737.38, B=115.06, Length=4000, Event=Down, log2FC=-5.02, padj=0
26379 cellexp id=ENSG00000198914, name=POU3F3, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
26379 cellexp id=ENSG00000269707, name=RP11-13J10.1, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
26379 tcgameth site:cg16767916, B=0.42, L=0.61, H=0.59
26379 tcgaexp gene=POU3F3, entrez=5455, pos=chr2:105471969-105473471(+), B=252, L=0, M=1, H=1