DMR 27108 chr3:124860351-124861100 (750bp)

DMR Stats
Positionchr3:124860351-124861100 (View on UCSC)
Width750bp
Genomic Contextintron
Nearest GenesSLC12A8 (0bp away)
ANODEV p-value3.34240443869e-09
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27108 SLC12A8 20639 uc003ehv.4 chr3 124801480 124931609 - 750 100.0 0.1 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
27108 SLC12A8 20639 uc003ehw.4 chr3 124801480 124998091 - 750 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
27108 SLC12A8 20639 uc010hrz.1 chr3 124837613 124931609 - 750 100.0 0.35 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27108 chr3 124860570 124861019 cpgIsland CpG: 48 length:450, cpgNum:48, gcNum:313, perCpg:21.3, perGc:69.6, obsExp:0.89, srow:18841
27108 chr3 124860229 124861028 wgEncodeRegTfbsClusteredV3 RUNX3 score:1000, expCount:1, expNums:109, expScores:1000, srow:2874506
27108 chr3 124860341 124860642 wgEncodeRegTfbsClusteredV3 MEF2A score:1000, expCount:1, expNums:93, expScores:1000, srow:2874522
27108 chr3 124860345 124860633 wgEncodeRegTfbsClusteredV3 MEF2C score:1000, expCount:1, expNums:94, expScores:1000, srow:2874524
27108 chr3 124860147 124860851 wgEncodeRegTfbsClusteredV3 NFIC score:1000, expCount:1, expNums:97, expScores:1000, srow:2874503
27108 chr3 124860142 124860552 wgEncodeRegTfbsClusteredV3 EBF1 score:1000, expCount:2, expNums:86,292, expScores:1000,436, srow:2874502
27108 chr3 124860712 124861141 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:56, expNums:2,5,20,37,39,42,44,137,290,597,601,603,604,605,606,607,609,618,635,636,639,640,641,642,643,644,645,646,648,650,651,652,653,654,655,656,657,658,659,660,661,662,664,668,669,672,673,674,675,676,677,678,682,685,686,687, expScores:486,318,195,170,133,138,111,249,819,486,680,1000,1000,1000,787,1000,229,93,593,231,369,137,128,384,201,104,166,378,668,795,748,632,814,600,571,363,153,113,282,129,333,367,109,133,170,293,317,186,337,380,540,239,158,169,433,284, srow:2874539
27108 chr3 124860326 124861315 wgEncodeRegDnaseClusteredV2 89 score:1000, srow:831610
27108 chr3 124860371 124860546 wgEncodeRegTfbsClusteredV3 RXRA score:128, expCount:1, expNums:110, expScores:128, srow:2874529
27108 chr3 124860245 124860520 wgEncodeRegTfbsClusteredV3 ZBTB33 score:132, expCount:1, expNums:120, expScores:132, srow:2874509
27108 chr3 124860676 124861051 wgEncodeRegTfbsClusteredV3 TBP score:153, expCount:1, expNums:359, expScores:153, srow:2874538
27108 chr3 124860780 124861059 wgEncodeRegTfbsClusteredV3 PAX5 score:160, expCount:1, expNums:129, expScores:160, srow:2874546
27108 chr3 124860660 124860983 wgEncodeRegTfbsClusteredV3 BACH1 score:160, expCount:1, expNums:341, expScores:160, srow:2874537
27108 chr3 124860787 124861026 wgEncodeRegTfbsClusteredV3 EGR1 score:168, expCount:1, expNums:87, expScores:168, srow:2874547
27108 chr3 124860748 124861071 wgEncodeRegTfbsClusteredV3 YY1 score:177, expCount:1, expNums:128, expScores:177, srow:2874542
27108 chr3 124860280 124860659 wgEncodeRegTfbsClusteredV3 CHD2 score:188, expCount:1, expNums:288, expScores:188, srow:2874514
27108 chr3 124860269 124860612 wgEncodeRegTfbsClusteredV3 YY1 score:190, expCount:1, expNums:119, expScores:190, srow:2874512
27108 chr3 124860720 124861095 wgEncodeRegTfbsClusteredV3 TAF1 score:206, expCount:2, expNums:115,132, expScores:121,206, srow:2874540
27108 chr3 124860847 124860949 wgEncodeRegTfbsClusteredV3 TCF3 score:227, expCount:1, expNums:117, expScores:227, srow:2874548
27108 chr3 124860430 124861019 wgEncodeRegTfbsClusteredV3 IKZF1 score:227, expCount:1, expNums:294, expScores:227, srow:2874535
27108 chr3 124860767 124861076 wgEncodeRegTfbsClusteredV3 POU2F2 score:237, expCount:1, expNums:125, expScores:237, srow:2874543
27108 chr3 124860509 124860510 phastConsElements100way lod=12 score:240, srow:6099488
27108 chr3 124860720 124860723 phastConsElements100way lod=13 score:247, srow:6099494
27108 chr3 124860331 124860570 wgEncodeRegTfbsClusteredV3 SPI1 score:249, expCount:1, expNums:126, expScores:249, srow:2874521
27108 chr3 124860430 124860514 wgEncodeRegTfbsClusteredV3 IRF4 score:270, expCount:1, expNums:92, expScores:270, srow:2874534
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  • 25 of 68 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27108 cellmeth_recounts PrEC: 25, LNCaP: 285, DU145: 17
27108 cellmeth_diffreps_PrECvsLNCaP A=0, B=20, Length=280, Event=Up, log2FC=Inf, padj=7.90773854123128e-06
27108 cellmeth_diffreps_PrECvsLNCaP A=33, B=205, Length=640, Event=Up, log2FC=2.64, padj=0
27108 cellmeth_diffreps_LNCaPvsDU145 A=241.6, B=12.16, Length=940, Event=Down, log2FC=-4.31, padj=0
27108 cellexp id=ENSG00000221955, name=SLC12A8, PrEC=1006, str=1530, LNCaP=2202, str=1700, DU145=756, str=610
27108 tcgameth site:cg12788878, B=0.26, L=0.53, H=0.52
27108 tcgameth site:cg26107890, B=0.32, L=0.74, H=0.72
27108 tcgameth site:cg26125625, B=0.26, L=0.5, H=0.48
27108 tcgaexp gene=SLC12A8, entrez=84561, pos=chr3:124801480-124998091(-), B=668, L=1221, M=1227, H=1315