DMR 27334 chr3:194118551-194119150 (600bp)

DMR Stats
Positionchr3:194118551-194119150 (View on UCSC)
Width600bp
Genomic Contextpromoter
Nearest GenesGP5 (0bp away)
ANODEV p-value1.72874552387e-08
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27334 GP5 21173 uc003ftv.1 chr3 194115550 194119995 - 600 100.0 2.67 0 0.0 E1 (0), I1 (23), E2 (77.17) 0.0
27334 GP5 21173 uc021xiz.1 chr3 194117329 194119011 - 461 76.83 1.69 0 100.0 E1 (76.83) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27334 chr3 194117602 194118988 cpgIsland CpG: 109 length:1387, cpgNum:109, gcNum:895, perCpg:15.7, perGc:64.5, obsExp:0.76, srow:19259
27334 chr3 194117446 194119275 wgEncodeRegDnaseClusteredV2 81 score:1000, srow:861380
27334 chr3 194118618 194118623 tfbsConsSites V$AML1_01 score:1000, zScore:1.78, srow:3671885
27334 chr3 194118317 194118626 wgEncodeRegTfbsClusteredV3 SUZ12 score:108, expCount:1, expNums:358, expScores:108, srow:2976416
27334 chr3 194118848 194118848 phastConsElements100way lod=13 score:247, srow:6338137
27334 chr3 194118980 194118982 phastConsElements100way lod=14 score:255, srow:6338143
27334 chr3 194118626 194118626 phastConsElements100way lod=15 score:262, srow:6338118
27334 chr3 194118632 194118632 phastConsElements100way lod=15 score:262, srow:6338119
27334 chr3 194118634 194118638 phastConsElements100way lod=15 score:262, srow:6338120
27334 chr3 194118659 194118660 phastConsElements100way lod=17 score:274, srow:6338122
27334 chr3 194118883 194118886 phastConsElements100way lod=17 score:274, srow:6338140
27334 chr3 194118682 194118684 phastConsElements100way lod=19 score:285, srow:6338125
27334 chr3 194118722 194118726 phastConsElements100way lod=19 score:285, srow:6338130
27334 chr3 194118740 194118741 phastConsElements100way lod=20 score:290, srow:6338132
27334 chr3 194118611 194118612 phastConsElements100way lod=21 score:295, srow:6338116
27334 chr3 194118759 194118762 phastConsElements100way lod=21 score:295, srow:6338133
27334 chr3 194118568 194118570 phastConsElements100way lod=22 score:300, srow:6338113
27334 chr3 194118578 194118579 phastConsElements100way lod=25 score:312, srow:6338114
27334 chr3 194118587 194118590 phastConsElements100way lod=25 score:312, srow:6338115
27334 chr3 194118641 194118642 phastConsElements100way lod=25 score:312, srow:6338121
27334 chr3 194118730 194118732 phastConsElements100way lod=25 score:312, srow:6338131
27334 chr3 194118792 194118795 phastConsElements100way lod=25 score:312, srow:6338135
27334 chr3 194118695 194118699 phastConsElements100way lod=26 score:316, srow:6338127
27334 chr3 194119007 194119010 phastConsElements100way lod=26 score:316, srow:6338144
27334 chr3 194118550 194118554 phastConsElements100way lod=27 score:320, srow:6338111
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  • 25 of 75 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27334 cellmeth_recounts PrEC: 32, LNCaP: 530, DU145: 9
27334 cellmeth_diffreps_PrECvsLNCaP A=169, B=1842, Length=2560, Event=Up, log2FC=3.45, padj=0
27334 cellmeth_diffreps_PrECvsDU145 A=45, B=2, Length=420, Event=Down, log2FC=-4.49, padj=3.8539251522487e-10
27334 cellmeth_diffreps_LNCaPvsDU145 A=1743.61, B=35.55, Length=1880, Event=Down, log2FC=-5.62, padj=0
27334 cellexp id=ENSG00000178732, name=GP5, PrEC=2, str=5, LNCaP=1, str=0, DU145=3, str=5
27334 tcgameth site:cg18780769, B=0.42, L=0.57, H=0.58
27334 tcgaexp gene=GP5, entrez=2814, pos=chr3:194115550-194119995(-), B=8, L=4, M=4, H=6