DMR 28342 chr5:172659001-172659750 (750bp)

DMR Stats
Positionchr5:172659001-172659750 (View on UCSC)
Width750bp
Genomic Context3' end
Nearest GenesNKX2-5 (0bp away)
ANODEV p-value2.08658349858e-10
FrequenciesBenign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 5.0 (55.56 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
28342 NKX2-5 23471 uc003mcm.2 chr5 172659107 172662315 - 644 85.87 0.73 0 0.0 E1 (0), I1 (0), E2 (85.87) 100.0
28342 NKX2-5 23471 uc010jjt.2 chr5 172659107 172662315 - 644 85.87 0.09 0 0.0 E1 (0), I1 (0), E2 (85.87) 100.0
28342 NKX2-5 23471 uc011dfe.2 chr5 172659107 172662315 - 644 85.87 0.09 0 0.0 E1 (0), I1 (0), E2 (85.87) 100.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
28342 chr5 172659050 172660277 cpgIsland CpG: 112 length:1228, cpgNum:112, gcNum:782, perCpg:18.2, perGc:63.7, obsExp:0.9, srow:21399
28342 chr5 172658265 172662418 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:9, expNums:3,6,15,17,21,36,38,40,43, expScores:157,619,526,169,339,264,436,218,454, srow:3383214
28342 chr5 172659536 172659538 phastConsElements100way lod=14 score:255, srow:7459426
28342 chr5 172659720 172659720 phastConsElements100way lod=15 score:262, srow:7459441
28342 chr5 172659196 172659197 phastConsElements100way lod=16 score:268, srow:7459422
28342 chr5 172659333 172659335 phastConsElements100way lod=16 score:268, srow:7459425
28342 chr5 172659690 172659690 phastConsElements100way lod=16 score:268, srow:7459435
28342 chr5 172659693 172659693 phastConsElements100way lod=17 score:274, srow:7459436
28342 chr5 172659696 172659696 phastConsElements100way lod=20 score:290, srow:7459437
28342 chr5 172659708 172659712 phastConsElements100way lod=20 score:290, srow:7459439
28342 chr5 172659714 172659715 phastConsElements100way lod=21 score:295, srow:7459440
28342 chr5 172659091 172659102 phastConsElements100way lod=23 score:304, srow:7459419
28342 chr5 172659606 172659607 phastConsElements100way lod=23 score:304, srow:7459430
28342 chr5 172659229 172659236 phastConsElements100way lod=26 score:316, srow:7459424
28342 chr5 172659622 172661000 wgEncodeRegTfbsClusteredV3 SUZ12 score:317, expCount:2, expNums:358,578, expScores:171,139, srow:3383217
28342 chr5 172659214 172659224 phastConsElements100way lod=29 score:327, srow:7459423
28342 chr5 172659699 172659705 phastConsElements100way lod=46 score:373, srow:7459438
28342 chr5 172659588 172659594 phastConsElements100way lod=70 score:414, srow:7459428
28342 chr5 172659597 172659604 phastConsElements100way lod=70 score:414, srow:7459429
28342 chr5 172659630 172659640 phastConsElements100way lod=82 score:430, srow:7459432
28342 chr5 172659109 172659131 phastConsElements100way lod=83 score:431, srow:7459420
28342 chr5 172659609 172659628 phastConsElements100way lod=86 score:434, srow:7459431
28342 chr5 172659750 172659760 phastConsElements100way lod=105 score:454, srow:7459443
28342 chr5 172659119 172659264 wgEncodeRegTfbsClusteredV3 EGR1 score:466, expCount:1, expNums:216, expScores:466, srow:3383216
28342 chr5 172659642 172659655 phastConsElements100way lod=119 score:467, srow:7459433
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  • 25 of 56 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
28342 cellmeth_recounts PrEC: 11, LNCaP: 210, DU145: 44
28342 cellmeth_diffreps_PrECvsLNCaP A=9, B=343, Length=1160, Event=Up, log2FC=5.25, padj=0
28342 cellmeth_diffreps_PrECvsDU145 A=0, B=20, Length=360, Event=Up, log2FC=Inf, padj=1.02756470669418e-05
28342 cellmeth_diffreps_LNCaPvsDU145 A=393.41, B=42.09, Length=1400, Event=Down, log2FC=-3.22, padj=0
28342 cellexp id=ENSG00000183072, name=NKX2-5, PrEC=0, str=0, LNCaP=1, str=0, DU145=41, str=76
28342 tcgameth site:cg07798980, B=0.48, L=0.62, H=0.6
28342 tcgameth site:cg19923650, B=0.08, L=0.31, H=0.42
28342 tcgaexp gene=NKX2-5, entrez=1482, pos=chr5:172659107-172662315(-), B=1, L=0, M=5, H=27