DMR 29893 chr8:49468251-49469100 (850bp)
| DMR Stats | |
|---|---|
| Position | chr8:49468251-49469100 (View on UCSC) |
| Width | 850bp |
| Genomic Context | intergenic |
| Nearest Genes | EFCAB1 (154250bp away) |
| ANODEV p-value | 4.33801143155e-12 |
| Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 29893 | chr8 | 49468684 | 49468959 | cpgIsland | CpG: 35 | length:276, cpgNum:35, gcNum:205, perCpg:25.4, perGc:74.3, obsExp:0.93, srow:25664 |
| 29893 | chr8 | 49467706 | 49468655 | wgEncodeRegDnaseClusteredV2 | 63 | score:1000, srow:1158857 |
| 29893 | chr8 | 49469019 | 49469026 | tfbsConsSites | V$STAT4_01 | score:1000, zScore:1.65, srow:5105227 |
| 29893 | chr8 | 49468733 | 49469096 | wgEncodeRegTfbsClusteredV3 | CTCF | score:130, expCount:2, expNums:642,661, expScores:130,122, srow:3985958 |
| 29893 | chr8 | 49468783 | 49469022 | wgEncodeRegTfbsClusteredV3 | USF1 | score:135, expCount:1, expNums:265, expScores:135, srow:3985961 |
| 29893 | chr8 | 49468766 | 49469189 | wgEncodeRegTfbsClusteredV3 | FOXP2 | score:168, expCount:2, expNums:251,255, expScores:168,147, srow:3985959 |
| 29893 | chr8 | 49468782 | 49469245 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:191, expCount:2, expNums:206,599, expScores:191,139, srow:3985960 |
| 29893 | chr8 | 49468827 | 49469270 | wgEncodeRegTfbsClusteredV3 | GATA2 | score:227, expCount:1, expNums:459, expScores:227, srow:3985962 |
| 29893 | chr8 | 49468165 | 49468421 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:240, expCount:3, expNums:149,264,355, expScores:226,240,196, srow:3985957 |
| 29893 | chr8 | 49468917 | 49469316 | wgEncodeRegTfbsClusteredV3 | FOS | score:254, expCount:1, expNums:457, expScores:254, srow:3985963 |
| 29893 | chr8 | 49468301 | 49468303 | phastConsElements100way | lod=15 | score:262, srow:8825222 |
| 29893 | chr8 | 49468316 | 49468322 | phastConsElements100way | lod=17 | score:274, srow:8825223 |
| 29893 | chr8 | 49469010 | 49469011 | phastConsElements100way | lod=17 | score:274, srow:8825235 |
| 29893 | chr8 | 49468236 | 49468252 | phastConsElements100way | lod=22 | score:300, srow:8825221 |
| 29893 | chr8 | 49468689 | 49468697 | phastConsElements100way | lod=22 | score:300, srow:8825231 |
| 29893 | chr8 | 49468396 | 49468402 | phastConsElements100way | lod=26 | score:316, srow:8825225 |
| 29893 | chr8 | 49468367 | 49468376 | phastConsElements100way | lod=31 | score:333, srow:8825224 |
| 29893 | chr8 | 49468422 | 49468440 | phastConsElements100way | lod=33 | score:340, srow:8825226 |
| 29893 | chr8 | 49469061 | 49469068 | phastConsElements100way | lod=41 | score:361, srow:8825237 |
| 29893 | chr8 | 49469100 | 49469106 | phastConsElements100way | lod=48 | score:377, srow:8825240 |
| 29893 | chr8 | 49469073 | 49469080 | phastConsElements100way | lod=51 | score:383, srow:8825238 |
| 29893 | chr8 | 49468943 | 49468958 | phastConsElements100way | lod=68 | score:411, srow:8825233 |
| 29893 | chr8 | 49468671 | 49468686 | phastConsElements100way | lod=70 | score:414, srow:8825230 |
| 29893 | chr8 | 49469085 | 49469098 | phastConsElements100way | lod=92 | score:441, srow:8825239 |
| 29893 | chr8 | 49468963 | 49468990 | phastConsElements100way | lod=139 | score:482, srow:8825234 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 29893 | cellmeth_recounts | PrEC: 3, LNCaP: 396, DU145: 28 |  |
| 29893 | cellmeth_diffreps_PrECvsLNCaP | A=4, B=318, Length=1100, Event=Up, log2FC=6.31, padj=0 |  |
| 29893 | cellmeth_diffreps_LNCaPvsDU145 | A=35.28, B=0.94, Length=400, Event=Down, log2FC=-5.24, padj=4.08953502356965e-08 |  |
| 29893 | cellmeth_diffreps_LNCaPvsDU145 | A=304.68, B=18.71, Length=660, Event=Down, log2FC=-4.03, padj=0 |  |
| 29893 | cellexp | id=ENSG00000253608, name=RP11-770E5.1, PrEC=8, str=27, LNCaP=0, str=0, DU145=0, str=0 |  |
| 29893 | cellexp | id=ENSG00000253688, name=RP11-567J20.2, PrEC=1, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 29893 | tcgameth | site:cg04920358, B=0.07, L=0.47, H=0.4 |  |
| 29893 | tcgameth | site:cg10826197, B=0.03, L=0.33, H=0.38 |  |
| 29893 | tcgameth | site:cg14095438, B=0.16, L=0.56, H=0.51 |  |
| 29893 | tcgameth | site:cg14907769, B=0.18, L=0.62, H=0.57 |  |
| 29893 | tcgameth | site:cg18991611, B=0.07, L=0.59, H=0.54 |  |
| 29893 | tcgameth | site:cg19414967, B=0.33, L=0.67, H=0.66 |  |
| 29893 | tcgameth | site:cg20527270, B=0.1, L=0.67, H=0.56 |  |
| 29893 | tcgameth | site:cg27038634, B=0.27, L=0.55, H=0.55 |  |