DMR 30507 chr9:112810151-112811000 (850bp)

DMR Stats
Positionchr9:112810151-112811000 (View on UCSC)
Width850bp
Genomic Contextpromoter
Nearest GenesPALM2-AKAP2, AKAP2 (0bp away)
ANODEV p-value3.75652071739e-09
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
30507 PALM2-AKAP2 29903 uc004bei.2 chr9 112542577 112900819 + 850 100.0 0.27 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0) 0.0
30507 PALM2-AKAP2 29903 uc004bej.4 chr9 112542577 112934791 + 850 100.0 0.47 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) 0.0
30507 PALM2-AKAP2 29903 uc004bek.4 chr9 112542577 112934791 + 850 100.0 0.2 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) 0.0
30507 PALM2-AKAP2 29903 uc004bel.1 chr9 112629647 112900819 + 850 100.0 0.2 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0) 0.0
30507 AKAP2 29903 uc004bem.3 chr9 112810878 112934791 + 123 14.47 0.09 0 100.0 E1 (14.47), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
30507 AKAP2 29903 uc011lwi.2 chr9 112810878 112934791 + 123 14.47 0.07 0 100.0 E1 (14.47), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 6 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
30507 chr9 112810859 112811128 cpgIsland CpG: 29 length:270, cpgNum:29, gcNum:212, perCpg:21.5, perGc:78.5, obsExp:0.7, srow:26890
30507 chr9 112810053 112811472 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:39, expNums:22,61,62,104,105,123,124,130,131,147,163,206,207,259,275,283,306,307,326,328,330,332,334,336,338,340,362,366,461,465,563,564,577,585,596,599,602,619,637, expScores:133,963,478,363,507,382,451,326,281,489,925,602,983,897,765,205,374,160,410,1000,1000,318,824,1000,519,527,106,256,138,1000,323,239,1000,471,224,672,190,686,460, srow:4211590
30507 chr9 112809941 112811075 wgEncodeRegDnaseClusteredV2 115 score:1000, srow:1231652
30507 chr9 112810494 112810769 wgEncodeRegTfbsClusteredV3 ZBTB33 score:128, expCount:1, expNums:120, expScores:128, srow:4211602
30507 chr9 112810202 112810505 wgEncodeRegTfbsClusteredV3 MYC score:141, expCount:1, expNums:347, expScores:141, srow:4211596
30507 chr9 112810919 112811174 wgEncodeRegTfbsClusteredV3 HDAC2 score:142, expCount:1, expNums:141, expScores:142, srow:4211615
30507 chr9 112810850 112811205 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:142, expCount:1, expNums:260, expScores:142, srow:4211613
30507 chr9 112810527 112810783 wgEncodeRegTfbsClusteredV3 CTCF score:148, expCount:2, expNums:604,605, expScores:148,119, srow:4211603
30507 chr9 112810156 112810425 wgEncodeRegTfbsClusteredV3 USF1 score:149, expCount:1, expNums:118, expScores:149, srow:4211595
30507 chr9 112810122 112810557 wgEncodeRegTfbsClusteredV3 YY1 score:156, expCount:2, expNums:119,128, expScores:156,156, srow:4211593
30507 chr9 112810833 112811096 wgEncodeRegTfbsClusteredV3 PAX5 score:165, expCount:1, expNums:100, expScores:165, srow:4211612
30507 chr9 112810818 112811181 wgEncodeRegTfbsClusteredV3 ELF1 score:170, expCount:1, expNums:88, expScores:170, srow:4211609
30507 chr9 112810301 112810624 wgEncodeRegTfbsClusteredV3 BACH1 score:192, expCount:1, expNums:341, expScores:192, srow:4211600
30507 chr9 112810826 112811345 wgEncodeRegTfbsClusteredV3 SIN3A score:201, expCount:1, expNums:357, expScores:201, srow:4211610
30507 chr9 112810074 112810446 wgEncodeRegTfbsClusteredV3 TAF1 score:216, expCount:2, expNums:115,127, expScores:120,216, srow:4211592
30507 chr9 112810542 112811168 wgEncodeRegTfbsClusteredV3 RELA score:223, expCount:2, expNums:325,331, expScores:190,223, srow:4211604
30507 chr9 112810147 112810816 wgEncodeRegTfbsClusteredV3 RBBP5 score:239, expCount:1, expNums:8, expScores:239, srow:4211594
30507 chr9 112810899 112810903 phastConsElements100way lod=13 score:247, srow:9411247
30507 chr9 112810833 112811072 wgEncodeRegTfbsClusteredV3 EGR1 score:253, expCount:1, expNums:87, expScores:253, srow:4211611
30507 chr9 112810711 112810802 wgEncodeRegTfbsClusteredV3 RUNX3 score:255, expCount:1, expNums:109, expScores:255, srow:4211606
30507 chr9 112810856 112810858 phastConsElements100way lod=15 score:262, srow:9411246
30507 chr9 112810929 112810938 phastConsElements100way lod=16 score:268, srow:9411249
30507 chr9 112810277 112810640 wgEncodeRegTfbsClusteredV3 ELF1 score:270, expCount:1, expNums:88, expScores:270, srow:4211599
30507 chr9 112810807 112811182 wgEncodeRegTfbsClusteredV3 TBP score:271, expCount:1, expNums:359, expScores:271, srow:4211608
30507 chr9 112810234 112810238 phastConsElements100way lod=17 score:274, srow:9411244
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  • 25 of 48 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
30507 cellmeth_recounts PrEC: 1, LNCaP: 37, DU145: 15
30507 cellmeth_diffreps_PrECvsLNCaP A=1, B=21, Length=340, Event=Up, log2FC=4.39, padj=0.000108416961794953
30507 cellexp id=ENSG00000157654, name=PALM2-AKAP2, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
30507 cellexp id=ENSG00000241978, name=AKAP2, PrEC=37, str=9, LNCaP=0, str=0, DU145=49, str=13
30507 tcgameth site:cg15083233, B=0.27, L=0.7, H=0.68
30507 tcgameth site:cg26288249, B=0.09, L=0.31, H=0.31
30507 tcgaexp gene=AKAP2, entrez=11217, pos=chr9:112810878-112934791(+), B=2313, L=1240, M=1343, H=1913
30507 tcgaexp gene=PALM2-AKAP2, entrez=445815, pos=chr9:112542577-112934791(+), B=2150, L=1511, M=1577, H=2237