DMR 35033 chr19:17403001-17403500 (500bp)

DMR Stats
Positionchr19:17403001-17403500 (View on UCSC)
Width500bp
Genomic Context3' end
Nearest GenesABHD8 (0bp away)
ANODEV p-value0.0111119314747
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
35033 ABHD8 14693 uc002ngb.4 chr19 17402940 17414282 - 500 100.0 0.12 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (100) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
35033 chr19 17403040 17403570 cpgIsland CpG: 47 length:531, cpgNum:47, gcNum:373, perCpg:17.7, perGc:70.2, obsExp:0.73, srow:13203
35033 chr19 17403301 17403754 wgEncodeRegTfbsClusteredV3 PHF8 score:1000, expCount:1, expNums:30, expScores:1000, srow:1979473
35033 chr19 17402965 17403845 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:49, expNums:61,62,78,105,131,146,147,163,168,206,207,228,229,249,259,306,307,308,326,328,330,332,334,336,338,340,362,366,402,403,520,521,522,523,525,563,564,577,583,585,596,599,602,610,613,619,622,633,637, expScores:1000,1000,431,372,452,600,1000,784,1000,187,348,230,1000,148,259,454,185,220,376,268,491,341,341,755,291,417,229,308,356,314,315,221,381,561,539,462,253,865,461,213,451,173,221,180,432,225,332,322,256, srow:1979455
35033 chr19 17403186 17403470 wgEncodeRegDnaseClusteredV2 84 score:1000, srow:569054
35033 chr19 17403471 17403774 wgEncodeRegTfbsClusteredV3 KDM5A score:113, expCount:1, expNums:7, expScores:113, srow:1979487
35033 chr19 17403097 17403406 wgEncodeRegTfbsClusteredV3 GABPA score:125, expCount:1, expNums:220, expScores:125, srow:1979458
35033 chr19 17403340 17403709 wgEncodeRegTfbsClusteredV3 CHD2 score:139, expCount:1, expNums:380, expScores:139, srow:1979476
35033 chr19 17403396 17403759 wgEncodeRegTfbsClusteredV3 GTF2F1 score:143, expCount:1, expNums:349, expScores:143, srow:1979481
35033 chr19 17402736 17403085 wgEncodeRegTfbsClusteredV3 HDAC2 score:152, expCount:1, expNums:27, expScores:152, srow:1979452
35033 chr19 17403259 17403648 wgEncodeRegTfbsClusteredV3 ETS1 score:153, expCount:1, expNums:218, expScores:153, srow:1979469
35033 chr19 17403267 17403742 wgEncodeRegTfbsClusteredV3 STAT1 score:155, expCount:1, expNums:410, expScores:155, srow:1979470
35033 chr19 17403390 17403789 wgEncodeRegTfbsClusteredV3 TBL1XR1 score:159, expCount:1, expNums:543, expScores:159, srow:1979479
35033 chr19 17403421 17403796 wgEncodeRegTfbsClusteredV3 ZKSCAN1 score:160, expCount:1, expNums:418, expScores:160, srow:1979483
35033 chr19 17403420 17403929 wgEncodeRegTfbsClusteredV3 SAP30 score:164, expCount:1, expNums:34, expScores:164, srow:1979482
35033 chr19 17403349 17403872 wgEncodeRegTfbsClusteredV3 HDAC1 score:171, expCount:1, expNums:26, expScores:171, srow:1979477
35033 chr19 17403141 17403596 wgEncodeRegTfbsClusteredV3 CCNT2 score:177, expCount:1, expNums:476, expScores:177, srow:1979460
35033 chr19 17403215 17403534 wgEncodeRegTfbsClusteredV3 SP1 score:193, expCount:1, expNums:112, expScores:193, srow:1979467
35033 chr19 17403225 17403740 wgEncodeRegTfbsClusteredV3 PML score:215, expCount:1, expNums:227, expScores:215, srow:1979468
35033 chr19 17403092 17403587 wgEncodeRegTfbsClusteredV3 HMGN3 score:224, expCount:1, expNums:501, expScores:224, srow:1979457
35033 chr19 17403021 17403023 phastConsElements100way lod=12 score:240, srow:4207094
35033 chr19 17403317 17403974 wgEncodeRegTfbsClusteredV3 SIN3A score:241, expCount:2, expNums:312,357, expScores:174,241, srow:1979475
35033 chr19 17403279 17403545 wgEncodeRegTfbsClusteredV3 NRF1 score:244, expCount:3, expNums:303,354,518, expScores:179,244,120, srow:1979471
35033 chr19 17402962 17403621 wgEncodeRegTfbsClusteredV3 SMARCB1 score:245, expCount:1, expNums:391, expScores:245, srow:1979454
35033 chr19 17403074 17403683 wgEncodeRegTfbsClusteredV3 SP4 score:247, expCount:1, expNums:155, expScores:247, srow:1979456
35033 chr19 17402719 17403012 wgEncodeRegTfbsClusteredV3 ZNF143 score:247, expCount:2, expNums:361,552, expScores:164,247, srow:1979451
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  • 25 of 52 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
35033 cellmeth_recounts PrEC: 127, LNCaP: 48, DU145: 12
35033 cellmeth_diffreps_PrECvsLNCaP A=223, B=43, Length=940, Event=Down, log2FC=-2.37, padj=0
35033 cellmeth_diffreps_PrECvsDU145 A=223, B=14, Length=1000, Event=Down, log2FC=-3.99, padj=0
35033 cellmeth_diffreps_LNCaPvsDU145 A=23.52, B=3.74, Length=200, Event=Down, log2FC=-2.65, padj=0.00630962522793068
35033 cellexp id=ENSG00000127220, name=ABHD8, PrEC=711, str=407, LNCaP=1584, str=902, DU145=1534, str=752
35033 cellexp id=ENSG00000130312, name=MRPL34, PrEC=2286, str=1036, LNCaP=3153, str=2855, DU145=1352, str=1180
35033 tcgameth site:cg12247222, B=0.45, L=0.53, H=0.54
35033 tcgameth site:cg18888655, B=0.55, L=0.58, H=0.61
35033 tcgaexp gene=ABHD8, entrez=79575, pos=chr19:17402940-17414282(-), B=1000, L=927, M=824, H=711