DMR 40255 chr12:75601451-75602000 (550bp)
| DMR Stats | |
|---|---|
| Position | chr12:75601451-75602000 (View on UCSC) |
| Width | 550bp |
| Genomic Context | exon |
| Nearest Genes | KCNC2 (0bp away) |
| ANODEV p-value | 6.16572055147e-07 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40255 | KCNC2 | 6759 | uc001sxe.4 | chr12 | 75433858 | 75603528 | - | 550 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (39.82), E2 (60.36), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 40255 | KCNC2 | 6759 | uc001sxf.4 | chr12 | 75433858 | 75603528 | - | 550 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (39.82), E2 (60.36), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 40255 | KCNC2 | 6759 | uc001sxg.2 | chr12 | 75433858 | 75603528 | - | 550 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (39.82), E2 (60.36), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 40255 | KCNC2 | 6759 | uc009zry.4 | chr12 | 75433858 | 75603528 | - | 550 | 100.0 | 0.08 | 0 | 0.0 | E1 (0), I1 (39.82), E2 (60.36), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 40255 | KCNC2 | 6759 | uc010stw.2 | chr12 | 75433858 | 75603528 | - | 550 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (39.82), E2 (60.36), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 40255 | KCNC2 | 6759 | uc031qif.1 | chr12 | 75433858 | 75603528 | - | 550 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (39.82), E2 (60.36), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
- 6 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 40255 | chr12 | 75601082 | 75601752 | cpgIsland | CpG: 69 | length:671, cpgNum:69, gcNum:427, perCpg:20.6, perGc:63.6, obsExp:1.02, srow:5592 |
| 40255 | chr12 | 75601582 | 75601583 | phastConsElements100way | lod=12 | score:240, srow:2085271 |
| 40255 | chr12 | 75601608 | 75601613 | phastConsElements100way | lod=17 | score:274, srow:2085273 |
| 40255 | chr12 | 75601477 | 75601482 | phastConsElements100way | lod=18 | score:280, srow:2085266 |
| 40255 | chr12 | 75601791 | 75601802 | phastConsElements100way | lod=24 | score:308, srow:2085284 |
| 40255 | chr12 | 75601642 | 75601643 | phastConsElements100way | lod=25 | score:312, srow:2085275 |
| 40255 | chr12 | 75601808 | 75601815 | phastConsElements100way | lod=27 | score:320, srow:2085285 |
| 40255 | chr12 | 75601672 | 75601673 | phastConsElements100way | lod=28 | score:323, srow:2085280 |
| 40255 | chr12 | 75601549 | 75601554 | phastConsElements100way | lod=31 | score:333, srow:2085269 |
| 40255 | chr12 | 75601651 | 75601652 | phastConsElements100way | lod=34 | score:343, srow:2085277 |
| 40255 | chr12 | 75601645 | 75601648 | phastConsElements100way | lod=35 | score:345, srow:2085276 |
| 40255 | chr12 | 75601669 | 75601670 | phastConsElements100way | lod=37 | score:351, srow:2085279 |
| 40255 | chr12 | 75601597 | 75601605 | phastConsElements100way | lod=39 | score:356, srow:2085272 |
| 40255 | chr12 | 75601507 | 75601516 | phastConsElements100way | lod=41 | score:361, srow:2085267 |
| 40255 | chr12 | 75601558 | 75601579 | phastConsElements100way | lod=43 | score:366, srow:2085270 |
| 40255 | chr12 | 75601626 | 75601640 | phastConsElements100way | lod=43 | score:366, srow:2085274 |
| 40255 | chr12 | 75601166 | 75601915 | wgEncodeRegDnaseClusteredV2 | 22 | score:386, srow:281028 |
| 40255 | chr12 | 75600753 | 75602399 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:447, expCount:6, expNums:15,19,21,38,40,43, expScores:341,137,382,240,397,377, srow:974715 |
| 40255 | chr12 | 75601519 | 75601538 | phastConsElements100way | lod=112 | score:461, srow:2085268 |
| 40255 | chr12 | 75601654 | 75601667 | phastConsElements100way | lod=120 | score:467, srow:2085278 |
| 40255 | chr12 | 75601720 | 75601733 | phastConsElements100way | lod=149 | score:489, srow:2085282 |
| 40255 | chr12 | 75601441 | 75601463 | phastConsElements100way | lod=304 | score:559, srow:2085265 |
| 40255 | chr12 | 75601735 | 75601787 | phastConsElements100way | lod=359 | score:576, srow:2085283 |
| 40255 | chr12 | 75601675 | 75601718 | phastConsElements100way | lod=409 | score:589, srow:2085281 |
| 40255 | chr12 | 75601756 | 75601773 | tfbsConsSites | V$SRF_01 | score:734, zScore:1.88, srow:1208190 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 40255 | cellmeth_recounts | PrEC: 1, LNCaP: 105, DU145: 22 |  |
| 40255 | cellmeth_diffreps_PrECvsLNCaP | A=7, B=101, Length=680, Event=Up, log2FC=3.85, padj=0 |  |
| 40255 | cellmeth_diffreps_LNCaPvsDU145 | A=110.11, B=17.77, Length=580, Event=Down, log2FC=-2.63, padj=0 |  |
| 40255 | cellexp | id=ENSG00000166006, name=KCNC2, PrEC=0, str=0, LNCaP=11, str=12, DU145=0, str=0 |  |
| 40255 | tcgameth | site:cg17203063, B=0.09, L=0.38, H=0.33 |  |
| 40255 | tcgameth | site:cg25820699, B=0.04, L=0.28, H=0.23 |  |
| 40255 | tcgaexp | gene=KCNC2, entrez=3747, pos=chr12:75433858-75603528(-), B=414, L=653, M=1571, H=3137 |  |
| 40255 | tcgaexp | gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512 |  |
| 40255 | tcgaexp | gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045 |  |
| 40255 | pubmed | gene=KCNC2, G=14, GP=0, GC=1, GM=0, GPM=0, GCM=0 |  |