DMR 40936 chr16:2391101-2391850 (750bp)

DMR Stats
Positionchr16:2391101-2391850 (View on UCSC)
Width750bp
Genomic Contextpromoter
Nearest GenesABCA17P (0bp away)
ANODEV p-value0.000180197983858
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
40936 ABCA17P 10788 uc002cqa.1 chr16 2389291 2417125 + 750 100.0 0.16 1 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
40936 ABCA17P 10788 uc002cqb.1 chr16 2390923 2412667 + 750 100.0 0.09 1 42.93 E1 (36.53), I1 (63.6), E2 (0), I2 (0), E3 (0) 0.0
40936 ABCA17P 10788 uc002cqc.1 chr16 2390923 2476700 + 750 100.0 0.12 1 42.93 E1 (36.53), I1 (63.6), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
40936 chr16 2389707 2392164 cpgIsland CpG: 247 length:2458, cpgNum:247, gcNum:1608, perCpg:20.1, perGc:65.4, obsExp:0.94, srow:8677
40936 chr16 2390919 2391229 wgEncodeRegTfbsClusteredV3 CBX3 score:1000, expCount:1, expNums:211, expScores:1000, srow:1450931
40936 chr16 2390877 2391144 wgEncodeRegTfbsClusteredV3 RAD21 score:1000, expCount:12, expNums:108,149,193,231,264,280,310,355,405,448,466,529, expScores:507,1000,784,567,1000,375,391,744,360,471,1000,114, srow:1450923
40936 chr16 2390679 2391238 wgEncodeRegTfbsClusteredV3 MYC score:1000, expCount:18, expNums:347,382,485,486,487,488,489,490,560,561,575,614,617,620,623,624,625,626, expScores:174,319,345,374,1000,777,1000,485,435,175,950,164,114,113,762,885,419,1000, srow:1450876
40936 chr16 2390763 2391404 wgEncodeRegTfbsClusteredV3 E2F6 score:1000, expCount:3, expNums:215,386,495, expScores:1000,580,1000, srow:1450903
40936 chr16 2390439 2391258 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:34, expNums:61,62,78,105,163,206,207,228,229,256,328,330,332,334,336,338,340,362,366,402,403,520,521,522,523,525,577,596,599,619,622,632,633,634, expScores:1000,899,400,630,412,324,448,193,903,656,418,328,310,226,726,330,262,140,154,408,281,288,210,305,486,477,252,479,224,338,435,777,516,243, srow:1450861
40936 chr16 2390908 2391184 wgEncodeRegTfbsClusteredV3 BHLHE40 score:1000, expCount:4, expNums:276,284,423,472, expScores:569,1000,1000,1000, srow:1450930
40936 chr16 2390560 2391305 wgEncodeRegTfbsClusteredV3 MAX score:1000, expCount:9, expNums:223,278,296,352,395,439,460,511,576, expScores:1000,1000,694,1000,638,569,1000,1000,1000, srow:1450868
40936 chr16 2390614 2391189 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:99, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,262,267,290,463,493,595,597,598,601,603,604,605,606,607,609,612,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,648,649,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:1000,1000,1000,1000,730,806,1000,1000,1000,1000,868,1000,1000,1000,1000,1000,1000,1000,1000,982,1000,990,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,768,1000,414,634,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,858,1000,1000,780,1000,1000,765,1000,144,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,492,1000,1000,1000,639,1000,1000,741,622,1000,260,1000,750,1000,1000,640,1000,1000,1000,1000,973,374,1000,1000,729,1000,1000,1000,1000,610, srow:1450870
40936 chr16 2390840 2391195 wgEncodeRegTfbsClusteredV3 STAT2 score:111, expCount:1, expNums:540, expScores:111, srow:1450916
40936 chr16 2390958 2391181 wgEncodeRegTfbsClusteredV3 NFE2 score:115, expCount:1, expNums:515, expScores:115, srow:1450938
40936 chr16 2390951 2391150 wgEncodeRegTfbsClusteredV3 SRF score:124, expCount:1, expNums:236, expScores:124, srow:1450936
40936 chr16 2390883 2391178 wgEncodeRegTfbsClusteredV3 HNF4A score:143, expCount:1, expNums:432, expScores:143, srow:1450927
40936 chr16 2390947 2391226 wgEncodeRegTfbsClusteredV3 MAFF score:154, expCount:1, expNums:509, expScores:154, srow:1450935
40936 chr16 2390848 2391247 wgEncodeRegTfbsClusteredV3 TBL1XR1 score:170, expCount:1, expNums:543, expScores:170, srow:1450919
40936 chr16 2390954 2391289 wgEncodeRegTfbsClusteredV3 RFX5 score:175, expCount:1, expNums:311, expScores:175, srow:1450937
40936 chr16 2391386 2391789 wgEncodeRegTfbsClusteredV3 ZBTB7A score:177, expCount:1, expNums:247, expScores:177, srow:1450942
40936 chr16 2390899 2391195 wgEncodeRegTfbsClusteredV3 USF2 score:196, expCount:2, expNums:319,360, expScores:174,196, srow:1450929
40936 chr16 2390881 2391296 wgEncodeRegTfbsClusteredV3 TRIM28 score:203, expCount:1, expNums:242, expScores:203, srow:1450926
40936 chr16 2390878 2391157 wgEncodeRegTfbsClusteredV3 MAFK score:207, expCount:1, expNums:510, expScores:207, srow:1450925
40936 chr16 2390742 2391237 wgEncodeRegTfbsClusteredV3 HMGN3 score:208, expCount:1, expNums:501, expScores:208, srow:1450893
40936 chr16 2390833 2391208 wgEncodeRegTfbsClusteredV3 TCF7L2 score:210, expCount:1, expNums:363, expScores:210, srow:1450913
40936 chr16 2390700 2391305 wgEncodeRegTfbsClusteredV3 EP300 score:212, expCount:5, expNums:145,263,304,443,519, expScores:147,166,149,172,212, srow:1450879
40936 chr16 2390808 2391211 wgEncodeRegTfbsClusteredV3 GTF2F1 score:216, expCount:1, expNums:500, expScores:216, srow:1450909
40936 chr16 2390858 2391177 wgEncodeRegTfbsClusteredV3 POU2F2 score:221, expCount:1, expNums:106, expScores:221, srow:1450921
  • Page 1 of 3
  • 25 of 66 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
40936 cellmeth_recounts PrEC: 27, LNCaP: 2020, DU145: 27
40936 cellmeth_diffreps_PrECvsLNCaP A=71, B=2529, Length=1560, Event=Up, log2FC=5.15, padj=0
40936 cellmeth_diffreps_LNCaPvsDU145 A=2699.34, B=26.19, Length=1480, Event=Down, log2FC=-6.69, padj=0
40936 cellexp id=ENSG00000238098, name=ABCA17P, PrEC=1, str=0, LNCaP=162, str=123, DU145=30, str=16
40936 tcgaexp gene=ABCA17P, entrez=650655, pos=chr16:2389291-2476700(+), B=11, L=8, M=9, H=9
40936 pubmed gene=ABCA3, G=200, GP=0, GC=36, GM=0, GPM=0, GCM=0
40936 pubmed gene=ABCA17P, G=2, GP=0, GC=0, GM=0, GPM=0, GCM=0