DMR 30218 chr9:6412301-6412850 (550bp)

DMR Stats
Positionchr9:6412301-6412850 (View on UCSC)
Width550bp
Genomic Contextpromoter
Nearest GenesUHRF2 (300bp away)
ANODEV p-value7.36160539934e-10
FrequenciesBenign: 3.0 (42.86%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
30218 chr9 6412640 6413155 wgEncodeRegTfbsClusteredV3 CEBPB score:407, expCount:3, expNums:85,378,477, expScores:216,407,173, srow:4120174
30218 chr9 6412816 6413008 wgEncodeRegTfbsClusteredV3 NFIC score:453, expCount:1, expNums:97, expScores:453, srow:4120184
30218 chr9 6412793 6413139 wgEncodeRegTfbsClusteredV3 EGR1 score:461, expCount:3, expNums:87,138,216, expScores:461,150,228, srow:4120182
30218 chr9 6412582 6413475 wgEncodeRegTfbsClusteredV3 MYC score:467, expCount:12, expNums:382,486,487,488,489,560,561,575,600,623,624,626, expScores:259,185,399,240,381,467,206,332,126,244,220,335, srow:4120171
30218 chr9 6412367 6413228 wgEncodeRegTfbsClusteredV3 MTA3 score:523, expCount:1, expNums:95, expScores:325, srow:4120159
30218 chr9 6412777 6413361 wgEncodeRegTfbsClusteredV3 FOXM1 score:617, expCount:1, expNums:90, expScores:211, srow:4120180
30218 chr9 6412498 6413447 wgEncodeRegTfbsClusteredV3 TAF1 score:642, expCount:10, expNums:65,115,127,132,157,169,199,238,254,261, expScores:136,617,536,242,160,453,363,339,218,383, srow:4120166
30218 chr9 6412772 6412792 tfbsConsSites V$STAT3_01 score:748, zScore:1.66, srow:5297836
30218 chr9 6412718 6412727 tfbsConsSites V$USF_Q6 score:952, zScore:2.58, srow:5297835
30218 chr9 6410354 6412353 cpgShore — values(x.gr)[overs$srow, ]:47658

Omics Overlaps

Dmrid Omic Set Data Plot
30218 cellmeth_recounts PrEC: 39, LNCaP: 302, DU145: 35
30218 cellmeth_diffreps_PrECvsLNCaP A=48, B=233, Length=640, Event=Up, log2FC=2.28, padj=0
30218 cellmeth_diffreps_PrECvsDU145 A=58, B=17, Length=380, Event=Down, log2FC=-1.77, padj=7.26627788439946e-05
30218 cellmeth_diffreps_LNCaPvsDU145 A=264.05, B=25.26, Length=740, Event=Down, log2FC=-3.39, padj=0
30218 tcgameth site:cg24119045, B=0.08, L=0.27, H=0.23