DMR Stats | |
---|---|
Position | chr4:141488801-141489150 (View on UCSC) |
Width | 350bp |
Genomic Context | exon |
Nearest Genes | UCP1 (0bp away) |
ANODEV p-value | 2.83004409837e-09 |
Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
27710 | UCP1 | 22085 | uc011chj.2 | chr4 | 141481050 | 141489959 | - | 350 | 100.0 | 0.48 | 0 | 0.0 | E1 (0), I1 (5.71), E2 (56.86), I2 (37.71), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
27710 | UCP1 | 22085 | uc011chk.2 | chr4 | 141481050 | 141489959 | - | 350 | 100.0 | 0.48 | 0 | 0.0 | E1 (0), I1 (5.71), E2 (56.86), I2 (37.71), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
27710 | chr4 | 141488746 | 141489230 | wgEncodeRegDnaseClusteredV2 | 39 | score:599, srow:908392 |
27710 | chr4 | 141488694 | 141490867 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:904, expCount:9, expNums:6,15,17,19,21,36,38,40,43, expScores:601,904,165,176,499,358,282,324,288, srow:3120815 |
27710 | chr4 | 141488814 | 141489077 | wgEncodeRegTfbsClusteredV3 | PAX5 | score:167, expCount:1, expNums:100, expScores:167, srow:3120816 |
27710 | chr4 | 141488984 | 141488984 | cosmic | COSM291092 | srow:916867 |
27710 | chr4 | 141489037 | 141489037 | cosmic | COSM732535 | srow:916868 |
27710 | chr4 | 141489046 | 141489046 | cosmic | COSM1427250 | srow:916869 |
27710 | chr4 | 141489055 | 141489055 | cosmic | COSM326812 | srow:916870 |
27710 | chr4 | 141489068 | 141489068 | cosmic | COSM149741 | srow:916871 |
27710 | chr4 | 141489105 | 141489105 | cosmic | COSM1169011 | srow:916872 |
27710 | chr4 | 141488927 | 141488932 | phastConsElements100way | lod=58 | score:395, srow:6742196 |
27710 | chr4 | 141488935 | 141488939 | phastConsElements100way | lod=34 | score:343, srow:6742197 |
27710 | chr4 | 141488941 | 141488942 | phastConsElements100way | lod=15 | score:262, srow:6742198 |
27710 | chr4 | 141488947 | 141488963 | phastConsElements100way | lod=123 | score:470, srow:6742199 |
27710 | chr4 | 141488965 | 141488969 | phastConsElements100way | lod=42 | score:363, srow:6742200 |
27710 | chr4 | 141488971 | 141488978 | phastConsElements100way | lod=81 | score:429, srow:6742201 |
27710 | chr4 | 141488980 | 141488983 | phastConsElements100way | lod=37 | score:351, srow:6742202 |
27710 | chr4 | 141488986 | 141488987 | phastConsElements100way | lod=20 | score:290, srow:6742203 |
27710 | chr4 | 141488989 | 141488993 | phastConsElements100way | lod=60 | score:399, srow:6742204 |
27710 | chr4 | 141488995 | 141489005 | phastConsElements100way | lod=99 | score:448, srow:6742205 |
27710 | chr4 | 141489007 | 141489011 | phastConsElements100way | lod=69 | score:413, srow:6742206 |
27710 | chr4 | 141489013 | 141489014 | phastConsElements100way | lod=28 | score:323, srow:6742207 |
27710 | chr4 | 141489016 | 141489017 | phastConsElements100way | lod=28 | score:323, srow:6742208 |
27710 | chr4 | 141489019 | 141489035 | phastConsElements100way | lod=146 | score:487, srow:6742209 |
27710 | chr4 | 141489037 | 141489038 | phastConsElements100way | lod=31 | score:333, srow:6742210 |
27710 | chr4 | 141489040 | 141489041 | phastConsElements100way | lod=24 | score:308, srow:6742211 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
27710 | cellmeth_recounts | PrEC: 7, LNCaP: 30, DU145: 15 | |
27710 | cellexp | id=ENSG00000109424, name=UCP1, PrEC=1, str=4, LNCaP=1, str=0, DU145=3, str=1 | |
27710 | tcgameth | site:cg01283834, B=0.2, L=0.63, H=0.56 | |
27710 | tcgameth | site:cg26004759, B=0.24, L=0.62, H=0.58 | |
27710 | tcgaexp | gene=UCP1, entrez=7350, pos=chr4:141481050-141489959(-), B=0, L=1, M=0, H=1 | |
27710 | tcgaexp | gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0 |