DMR Stats | |
---|---|
Position | chr1:1490901-1491050 (View on UCSC) |
Width | 150bp |
Genomic Context | intron |
Nearest Genes | SSU72 (0bp away) |
ANODEV p-value | 0.0292169518798 |
Frequencies | Benign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
13 | SSU72 | 74 | uc001agd.3 | chr1 | 1477053 | 1510262 | - | 150 | 100.0 | 0.42 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
13 | SSU72 | 74 | uc009vkg.1 | chr1 | 1478560 | 1510262 | - | 150 | 100.0 | 1.67 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
13 | chr1 | 1490621 | 1491129 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:392, expCount:1, expNums:105, expScores:392, srow:4172 |
13 | chr1 | 1489795 | 1491794 | cpgShore | — | values(x.gr)[overs$srow, ]:175 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
13 | cellmeth_recounts | PrEC: 144, LNCaP: 58, DU145: 12 | |
13 | cellmeth_diffreps_PrECvsLNCaP | A=262, B=55, Length=660, Event=Down, log2FC=-2.25, padj=0 | |
13 | cellmeth_diffreps_PrECvsDU145 | A=262, B=13, Length=680, Event=Down, log2FC=-4.33, padj=0 | |
13 | cellmeth_diffreps_LNCaPvsDU145 | A=50.25, B=8.42, Length=400, Event=Down, log2FC=-2.58, padj=2.5183541234433e-06 | |
13 | cellexp | id=ENSG00000160075, name=SSU72, PrEC=6250, str=3004, LNCaP=7955, str=8795, DU145=3456, str=3590 | |
13 | tcgameth | site:cg10987926, B=0.94, L=0.94, H=0.93 | |
13 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
13 | tcgaexp | gene=SSU72, entrez=29101, pos=chr1:1477053-1510262(-), B=6883, L=8353, M=8488, H=7643 | |
13 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |