DMR Stats | |
---|---|
Position | chr1:3450151-3450350 (View on UCSC) |
Width | 200bp |
Genomic Context | intron |
Nearest Genes | MEGF6 (0bp away) |
ANODEV p-value | 0.00590754460371 |
Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
24912 | MEGF6 | 120 | uc001akl.3 | chr1 | 3404506 | 3528059 | - | 200 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0), I34 (0), E35 (0), I35 (0), E36 (0), I36 (0), E37 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
24912 | chr1 | 3450106 | 3450295 | wgEncodeRegDnaseClusteredV2 | 12 | score:1000, srow:2704 |
24912 | chr1 | 3450014 | 3450432 | wgEncodeRegTfbsClusteredV3 | TBP | score:144, expCount:2, expNums:412,545, expScores:120,144, srow:9587 |
24912 | chr1 | 3450016 | 3450445 | wgEncodeRegTfbsClusteredV3 | CTCF | score:853, expCount:27, expNums:5,12,24,39,44,137,174,213,493,595,597,598,609,612,615,621,627,628,629,630,635,639,659,667,679,683,688, expScores:448,296,652,179,155,294,213,337,442,161,265,182,490,249,129,620,256,359,202,203,853,186,126,309,304,396,335, srow:9588 |
24912 | chr1 | 3450075 | 3450364 | wgEncodeRegTfbsClusteredV3 | ZNF143 | score:181, expCount:1, expNums:361, expScores:181, srow:9589 |
24912 | chr1 | 3450082 | 3450340 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:251, expCount:3, expNums:149,193,355, expScores:251,171,202, srow:9590 |
24912 | chr1 | 3450142 | 3450275 | wgEncodeRegTfbsClusteredV3 | UBTF | score:259, expCount:1, expNums:549, expScores:259, srow:9591 |
24912 | chr1 | 3449951 | 3451950 | cpgShelf | — | values(x.gr)[overs$srow, ]:283 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
24912 | cellmeth_recounts | PrEC: 5, LNCaP: 14, DU145: 0 | |
24912 | cellmeth_diffreps_LNCaPvsDU145 | A=11.76, B=0, Length=260, Event=Down, log2FC=-Inf, padj=0.00547907730955432 | |
24912 | cellexp | id=ENSG00000162591, name=MEGF6, PrEC=207, str=606, LNCaP=365, str=127, DU145=1319, str=853 | |
24912 | tcgameth | site:cg20481720, B=0.58, L=0.7, H=0.69 | |
24912 | tcgaexp | gene=MEGF6, entrez=1953, pos=chr1:3404506-3528059(-), B=2248, L=2404, M=2137, H=1929 | |
24912 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
24912 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |