DMR Stats | |
---|---|
Position | chr17:185951-186150 (View on UCSC) |
Width | 200bp |
Genomic Context | intron |
Nearest Genes | RPH3AL (0bp away) |
ANODEV p-value | 0.0121573016647 |
Frequencies | Benign: 2.0 (28.57%), Low: 4.0 (66.67%), High: 8.0 (88.89 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
33861 | RPH3AL | 11877 | uc002fre.2 | chr17 | 62180 | 202633 | - | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
33861 | RPH3AL | 11877 | uc002frf.2 | chr17 | 62180 | 202633 | - | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
33861 | RPH3AL | 11877 | uc010cjl.2 | chr17 | 62180 | 202633 | - | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
33861 | RPH3AL | 11877 | uc021tmx.1 | chr17 | 62180 | 202633 | - | 200 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
33861 | chr17 | 185921 | 186735 | wgEncodeRegDnaseClusteredV2 | 55 | score:979, srow:471098 |
33861 | chr17 | 186011 | 186611 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:1000, expCount:1, expNums:368, expScores:515, srow:1606323 |
33861 | chr17 | 185977 | 185996 | tfbsConsSites | V$YY1_02 | score:780, zScore:1.96, srow:2056669 |
33861 | chr17 | 185978 | 185991 | tfbsConsSites | V$ATF_01 | score:830, zScore:1.8, srow:2056670 |
33861 | chr17 | 185979 | 185994 | tfbsConsSites | V$TAL1BETAE47_01 | score:850, zScore:1.9, srow:2056671 |
33861 | chr17 | 185979 | 185994 | tfbsConsSites | V$TAL1BETAITF2_01 | score:852, zScore:1.83, srow:2056672 |
33861 | chr17 | 186026 | 186038 | tfbsConsSites | V$GATA1_04 | score:898, zScore:2.04, srow:2056673 |
33861 | chr17 | 186028 | 186036 | tfbsConsSites | V$GATA3_01 | score:940, zScore:2, srow:2056674 |
33861 | chr17 | 186028 | 186036 | tfbsConsSites | V$LMO2COM_02 | score:938, zScore:2.48, srow:2056675 |
33861 | chr17 | 186029 | 186039 | tfbsConsSites | V$EVI1_03 | score:828, zScore:2.05, srow:2056676 |
33861 | chr17 | 186030 | 186041 | tfbsConsSites | V$AREB6_02 | score:895, zScore:1.65, srow:2056677 |
33861 | chr17 | 186060 | 186069 | tfbsConsSites | V$MYOD_Q6 | score:988, zScore:2.1, srow:2056678 |
33861 | chr17 | 186062 | 186073 | tfbsConsSites | V$MEIS1_01 | score:918, zScore:2.04, srow:2056679 |
33861 | chr17 | 186066 | 186083 | tfbsConsSites | V$AHR_01 | score:783, zScore:1.99, srow:2056680 |
33861 | chr17 | 185944 | 186023 | phastConsElements100way | lod=200 | score:518, srow:3518415 |
33861 | chr17 | 186029 | 186046 | phastConsElements100way | lod=47 | score:375, srow:3518416 |
33861 | chr17 | 186062 | 186070 | phastConsElements100way | lod=27 | score:320, srow:3518417 |
33861 | chr17 | 186082 | 186086 | phastConsElements100way | lod=20 | score:290, srow:3518418 |
33861 | chr17 | 186096 | 186103 | phastConsElements100way | lod=13 | score:247, srow:3518419 |
33861 | chr17 | 186106 | 186121 | phastConsElements100way | lod=14 | score:255, srow:3518420 |
33861 | chr17 | 185297 | 187296 | cpgShore | — | values(x.gr)[overs$srow, ]:18037 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
33861 | cellmeth_recounts | PrEC: 0, LNCaP: 8, DU145: 9 | |
33861 | cellexp | id=ENSG00000181031, name=RPH3AL, PrEC=139, str=116, LNCaP=825, str=593, DU145=1180, str=616 | |
33861 | tcgaexp | gene=RPH3AL, entrez=9501, pos=chr17:62180-202633(-), B=579, L=622, M=682, H=475 | |
33861 | tcgaexp | gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418 | |
33861 | tcgaexp | gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486 |