DMR Stats | |
---|---|
Position | chr1:146543901-146545000 (View on UCSC) |
Width | 1100bp |
Genomic Context | promoter |
Nearest Genes | TRNA_His (0bp away) |
ANODEV p-value | 1.15524581354e-09 |
Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 8.0 (88.89 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
25574 | TRNA_His | 1521 | uc021ovi.1 | chr1 | 146544773 | 146544844 | + | 72 | 6.55 | 0.87 | 1 | 100.0 | E1 (6.55) | 100.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
25574 | chr1 | 146544026 | 146545195 | wgEncodeRegDnaseClusteredV2 | 41 | score:443, srow:68430 |
25574 | chr1 | 146543827 | 146544250 | wgEncodeRegTfbsClusteredV3 | RPC155 | score:201, expCount:1, expNums:531, expScores:201, srow:239738 |
25574 | chr1 | 146543868 | 146544924 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:474, expCount:5, expNums:6,21,36,38,40, expScores:467,474,258,192,224, srow:239739 |
25574 | chr1 | 146543895 | 146544280 | wgEncodeRegTfbsClusteredV3 | TBP | score:479, expCount:2, expNums:359,545, expScores:479,241, srow:239740 |
25574 | chr1 | 146543937 | 146544260 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:154, expCount:1, expNums:215, expScores:154, srow:239741 |
25574 | chr1 | 146544012 | 146544681 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:228, expCount:1, expNums:8, expScores:228, srow:239742 |
25574 | chr1 | 146544549 | 146544950 | wgEncodeRegTfbsClusteredV3 | TBP | score:1000, expCount:3, expNums:317,359,545, expScores:199,1000,247, srow:239743 |
25574 | chr1 | 146544603 | 146544925 | wgEncodeRegTfbsClusteredV3 | PAX5 | score:291, expCount:2, expNums:100,101, expScores:291,153, srow:239744 |
25574 | chr1 | 146544657 | 146544926 | wgEncodeRegTfbsClusteredV3 | GTF3C2 | score:131, expCount:1, expNums:546, expScores:131, srow:239745 |
25574 | chr1 | 146544682 | 146544937 | wgEncodeRegTfbsClusteredV3 | RPC155 | score:736, expCount:1, expNums:531, expScores:736, srow:239746 |
25574 | chr1 | 146544746 | 146544985 | wgEncodeRegTfbsClusteredV3 | USF1 | score:294, expCount:1, expNums:161, expScores:294, srow:239747 |
25574 | chr1 | 146544776 | 146544846 | phastConsElements100way | lod=29 | score:327, srow:514503 |
25574 | chr1 | 146543988 | 146544439 | cpgIsland | CpG: 37 | length:452, cpgNum:37, gcNum:274, perCpg:16.4, perGc:60.6, obsExp:0.9, srow:1562 |
25574 | chr1 | 146541988 | 146543987 | cpgShore | — | values(x.gr)[overs$srow, ]:2872 |
25574 | chr1 | 146544440 | 146546439 | cpgShore | — | values(x.gr)[overs$srow, ]:2873 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
25574 | cellmeth_recounts | PrEC: 3, LNCaP: 35, DU145: 100 | |
25574 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=11, Length=200, Event=Up, log2FC=Inf, padj=0.00296620769710024 | |
25574 | cellmeth_diffreps_PrECvsDU145 | A=0, B=17, Length=340, Event=Up, log2FC=Inf, padj=7.41301388411866e-05 | |
25574 | cellmeth_diffreps_PrECvsDU145 | A=4, B=66, Length=860, Event=Up, log2FC=4.04, padj=7.20014279297626e-14 | |
25574 | cellmeth_diffreps_LNCaPvsDU145 | A=0, B=32.74, Length=380, Event=Up, log2FC=Inf, padj=6.06755184566737e-09 | |
25574 | cellexp | id=ENSG00000227242, name=NBPF13P, PrEC=15, str=32, LNCaP=9, str=3, DU145=3, str=4 | |
25574 | tcgameth | site:cg01701555, B=0.46, L=0.64, H=0.62 | |
25574 | tcgameth | site:cg10124710, B=0.3, L=0.64, H=0.59 | |
25574 | tcgameth | site:cg23019889, B=0.48, L=0.71, H=0.72 | |
25574 | tcgaexp | gene=NBPF9, entrez=400818, pos=chr1:144146811-148346929(-), B=433, L=627, M=621, H=693 | |
25574 | tcgaexp | gene=PPIAL4B, entrez=653505, pos=chr1:144363462-149553787(-), B=0, L=0, M=0, H=0 | |
25574 | tcgaexp | gene=LINC00623, entrez=728855, pos=chr1:144300512-149616786(-), B=727, L=966, M=1062, H=1250 | |
25574 | tcgaexp | gene=GPR89C, entrez=728932, pos=chr1:145883868-147465755(+), B=144, L=216, M=221, H=229 | |
25574 | tcgaexp | gene=PDZK1P1, entrez=728939, pos=chr1:145924388-147484331(-), B=12, L=18, M=14, H=12 | |
25574 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |