DMR 1268 chr2:171573651-171573900 (250bp)

DMR Stats
Positionchr2:171573651-171573900 (View on UCSC)
Width250bp
Genomic Context3' end
Nearest GenesSP5 (0bp away)
ANODEV p-value5.89420455157e-05
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
1268 SP5 17256 uc002uge.3 chr2 171571857 171574498 + 250 100.0 0.14 0 0.0 E1 (0), I1 (0), E2 (100) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
1268 chr2 171573366 171574175 wgEncodeRegDnaseClusteredV2 72 score:1000, srow:664856
1268 chr2 171573294 171573673 wgEncodeRegTfbsClusteredV3 ARID3A score:160, expCount:1, expNums:422, expScores:160, srow:2326682
1268 chr2 171573474 171573737 wgEncodeRegTfbsClusteredV3 BHLHE40 score:1000, expCount:3, expNums:171,276,423, expScores:88,213,1000, srow:2326694
1268 chr2 171573716 171573716 cosmic COSM1009461 srow:688236
1268 chr2 171573821 171573821 cosmic COSM1009462 srow:688242
1268 chr2 171573752 171573752 cosmic COSM1240286 srow:688239
1268 chr2 171573740 171573740 cosmic COSM1266525 srow:688238
1268 chr2 171573732 171573732 cosmic COSM1401223 srow:688237
1268 chr2 171573664 171573664 cosmic COSM1613685 srow:688235
1268 chr2 171573780 171573780 cosmic COSM1691381 srow:688241
1268 chr2 171573769 171573769 cosmic COSM717766 srow:688240
1268 chr2 171573300 171573891 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:68, expNums:2,5,12,14,16,18,20,35,37,39,42,44,48,49,137,174,262,290,463,595,597,601,605,607,609,615,618,635,636,638,639,640,642,643,644,645,646,647,652,653,654,655,656,657,658,659,660,661,662,664,665,667,668,669,671,672,673,674,675,676,677,678,682,683,684,685,686,687, expScores:219,718,444,150,428,104,641,150,586,142,306,345,255,231,1000,664,317,132,364,1000,912,160,548,172,551,133,142,573,466,272,665,370,557,260,274,119,198,418,287,439,439,138,101,517,431,549,117,665,458,116,577,605,120,397,414,339,260,267,151,588,823,495,583,322,118,452,376,890, srow:2326684
1268 chr2 171569878 171573904 cpgIsland CpG: 331 length:4027, cpgNum:331, gcNum:2448, perCpg:16.4, perGc:60.8, obsExp:0.89, srow:15691
1268 chr2 171573258 171573691 wgEncodeRegTfbsClusteredV3 EP300 score:154, expCount:2, expNums:145,190, expScores:150,154, srow:2326679
1268 chr2 171568872 171574381 wgEncodeRegTfbsClusteredV3 EZH2 score:882, expCount:10, expNums:3,6,15,17,19,21,36,38,40,43, expScores:157,666,261,201,100,424,239,238,226,262, srow:2326578
1268 chr2 171573419 171573805 wgEncodeRegTfbsClusteredV3 MAX score:686, expCount:3, expNums:278,352,439, expScores:162,686,263, srow:2326692
1268 chr2 171573271 171573660 wgEncodeRegTfbsClusteredV3 MAZ score:157, expCount:1, expNums:440, expScores:157, srow:2326681
1268 chr2 171573389 171573788 wgEncodeRegTfbsClusteredV3 MXI1 score:477, expCount:1, expNums:441, expScores:477, srow:2326689
1268 chr2 171573412 171573661 wgEncodeRegTfbsClusteredV3 MYC score:194, expCount:1, expNums:614, expScores:194, srow:2326691
1268 chr2 171573259 171574229 wgEncodeRegTfbsClusteredV3 POLR2A score:824, expCount:4, expNums:191,192,445,446, expScores:251,239,91,229, srow:2326680
1268 chr2 171573412 171573759 wgEncodeRegTfbsClusteredV3 REST score:187, expCount:2, expNums:144,188, expScores:183,187, srow:2326690
1268 chr2 171573345 171573800 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:240, expCount:1, expNums:195, expScores:240, srow:2326686
1268 chr2 171573576 171573885 wgEncodeRegTfbsClusteredV3 SUZ12 score:149, expCount:1, expNums:358, expScores:149, srow:2326700
1268 chr2 171573509 171573944 wgEncodeRegTfbsClusteredV3 TAF1 score:699, expCount:2, expNums:65,199, expScores:197,699, srow:2326699
1268 chr2 171573504 171573763 wgEncodeRegTfbsClusteredV3 TCF12 score:283, expCount:1, expNums:159, expScores:283, srow:2326698
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Omics Overlaps

Dmrid Omic Set Data Plot
1268 cellmeth_recounts PrEC: 138, LNCaP: 1546, DU145: 18
1268 cellmeth_diffreps_PrECvsLNCaP A=402, B=4269, Length=2660, Event=Up, log2FC=3.41, padj=0
1268 cellmeth_diffreps_PrECvsDU145 A=395, B=41, Length=1480, Event=Down, log2FC=-3.27, padj=0
1268 cellmeth_diffreps_LNCaPvsDU145 A=4563.75, B=46.77, Length=2640, Event=Down, log2FC=-6.61, padj=0
1268 cellexp id=ENSG00000204335, name=SP5, PrEC=4, str=0, LNCaP=2, str=0, DU145=98, str=73
1268 tcgameth site:cg00858840, B=0.5, L=0.64, H=0.61
1268 tcgameth site:cg21829923, B=0.63, L=0.75, H=0.73
1268 tcgaexp gene=SP5, entrez=389058, pos=chr2:171571857-171574498(+), B=174, L=495, M=434, H=410