DMR 24985 chr1:9689901-9690050 (150bp)

DMR Stats
Positionchr1:9689901-9690050 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesTMEM201 (14965bp away)
ANODEV p-value0.0132605655884
FrequenciesBenign: 2.0 (28.57%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
24985 chr1 9689368 9691367 cpgShelf — values(x.gr)[overs$srow, ]:468
24985 chr1 9689741 9690155 wgEncodeRegDnaseClusteredV2 28 score:1000, srow:7902
24985 chr1 9689405 9690171 wgEncodeRegTfbsClusteredV3 ATF2 score:300, expCount:1, expNums:79, expScores:273, srow:24594
24985 chr1 9689763 9690042 wgEncodeRegTfbsClusteredV3 BCL11A score:271, expCount:1, expNums:82, expScores:271, srow:24620
24985 chr1 9689666 9690021 wgEncodeRegTfbsClusteredV3 BCL3 score:320, expCount:1, expNums:83, expScores:320, srow:24606
24985 chr1 9689708 9690056 wgEncodeRegTfbsClusteredV3 BHLHE40 score:807, expCount:2, expNums:284,472, expScores:807,475, srow:24612
24985 chr1 9689471 9689910 wgEncodeRegTfbsClusteredV3 CBX3 score:437, expCount:1, expNums:211, expScores:437, srow:24596
24985 chr1 9689714 9690093 wgEncodeRegTfbsClusteredV3 CHD2 score:240, expCount:1, expNums:288, expScores:240, srow:24614
24985 chr1 9689690 9690005 wgEncodeRegTfbsClusteredV3 EBF1 score:546, expCount:1, expNums:292, expScores:546, srow:24608
24985 chr1 9689912 9690074 wgEncodeRegTfbsClusteredV3 EGR1 score:636, expCount:2, expNums:87,216, expScores:451,636, srow:24628
24985 chr1 9689753 9690048 wgEncodeRegTfbsClusteredV3 ELF1 score:1000, expCount:2, expNums:88,217, expScores:1000,553, srow:24617
24985 chr1 9689685 9690092 wgEncodeRegTfbsClusteredV3 EP300 score:238, expCount:2, expNums:304,519, expScores:238,182, srow:24607
24985 chr1 9689773 9689996 wgEncodeRegTfbsClusteredV3 ETS1 score:96, expCount:1, expNums:89, expScores:96, srow:24624
24985 chr1 9689654 9690173 wgEncodeRegTfbsClusteredV3 FOXM1 score:237, expCount:1, expNums:90, expScores:237, srow:24604
24985 chr1 9689429 9689952 wgEncodeRegTfbsClusteredV3 HDAC1 score:186, expCount:1, expNums:26, expScores:186, srow:24595
24985 chr1 9689696 9690025 wgEncodeRegTfbsClusteredV3 IRF4 score:222, expCount:1, expNums:92, expScores:222, srow:24609
24985 chr1 9689602 9690177 wgEncodeRegTfbsClusteredV3 KDM5B score:175, expCount:1, expNums:31, expScores:175, srow:24602
24985 chr1 9689900 9690175 wgEncodeRegTfbsClusteredV3 MAX score:612, expCount:2, expNums:223,576, expScores:244,612, srow:24627
24985 chr1 9689748 9690208 wgEncodeRegTfbsClusteredV3 MAZ score:239, expCount:2, expNums:297,512, expScores:236,239, srow:24616
24985 chr1 9689831 9690270 wgEncodeRegTfbsClusteredV3 MYC score:564, expCount:2, expNums:489,575, expScores:211,564, srow:24625
24985 chr1 9689658 9690253 wgEncodeRegTfbsClusteredV3 NFIC score:244, expCount:1, expNums:97, expScores:244, srow:24605
24985 chr1 9689706 9690058 wgEncodeRegTfbsClusteredV3 PAX5 score:252, expCount:2, expNums:101,129, expScores:252,119, srow:24611
24985 chr1 9689899 9690146 wgEncodeRegTfbsClusteredV3 PML score:343, expCount:1, expNums:103, expScores:343, srow:24626
24985 chr1 9688412 9690393 wgEncodeRegTfbsClusteredV3 POLR2A score:947, expCount:20, expNums:104,105,123,124,130,131,306,307,308,326,328,330,332,334,336,338,340,577,585,602, expScores:445,425,464,324,423,449,441,319,227,391,239,280,325,220,350,165,259,351,401,233, srow:24554
24985 chr1 9689701 9690020 wgEncodeRegTfbsClusteredV3 POU2F2 score:261, expCount:1, expNums:106, expScores:261, srow:24610
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Omics Overlaps

Dmrid Omic Set Data Plot
24985 cellmeth_recounts PrEC: 16, LNCaP: 4, DU145: 6
24985 cellmeth_diffreps_PrECvsLNCaP A=34, B=4, Length=360, Event=Down, log2FC=-3.09, padj=1.07779658804505e-05
24985 cellmeth_diffreps_PrECvsDU145 A=34, B=6, Length=320, Event=Down, log2FC=-2.5, padj=0.000186604078182962
24985 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
24985 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305