DMR 25022 chr1:14057451-14057650 (200bp)

DMR Stats
Positionchr1:14057451-14057650 (View on UCSC)
Width200bp
Genomic Contextexon
Nearest GenesPRDM2 (0bp away)
ANODEV p-value2.87697924346e-05
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25022 PRDM2 265 uc001avg.3 chr1 14026735 14151574 + 200 100.0 0.11 0 0.0 E1 (0), I1 (0), E2 (0), I2 (22), E3 (59), I3 (19.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
25022 PRDM2 265 uc001avh.3 chr1 14031350 14114574 + 200 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (22), E3 (59), I3 (19.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
25022 PRDM2 265 uc001avi.3 chr1 14031350 14151574 + 200 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (22), E3 (59), I3 (19.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25022 chr1 14057226 14057775 wgEncodeRegDnaseClusteredV2 57 score:1000, srow:10805
25022 chr1 14057181 14057538 wgEncodeRegTfbsClusteredV3 ATF2 score:847, expCount:1, expNums:79, expScores:847, srow:35545
25022 chr1 14057254 14057489 wgEncodeRegTfbsClusteredV3 BATF score:201, expCount:1, expNums:81, expScores:201, srow:35555
25022 chr1 14057304 14057583 wgEncodeRegTfbsClusteredV3 BCL11A score:138, expCount:1, expNums:82, expScores:138, srow:35559
25022 chr1 14057380 14057799 wgEncodeRegTfbsClusteredV3 BCLAF1 score:228, expCount:1, expNums:84, expScores:228, srow:35569
25022 chr1 14057388 14057717 wgEncodeRegTfbsClusteredV3 BHLHE40 score:380, expCount:1, expNums:284, expScores:380, srow:35572
25022 chr1 14057295 14057674 wgEncodeRegTfbsClusteredV3 CHD2 score:206, expCount:1, expNums:288, expScores:206, srow:35558
25022 chr1 14057612 14057612 cosmic COSM1221886 srow:8274
25022 chr1 14057566 14057566 cosmic COSM1333443 srow:8272
25022 chr1 14057606 14057606 cosmic COSM895000 srow:8273
25022 chr1 14057327 14057720 wgEncodeRegTfbsClusteredV3 CTCF score:265, expCount:13, expNums:0,2,290,603,604,605,606,607,650,651,652,653,655, expScores:133,161,265,114,179,150,122,120,217,170,245,217,99, srow:35562
25022 chr1 14057385 14057708 wgEncodeRegTfbsClusteredV3 E2F6 score:188, expCount:1, expNums:215, expScores:188, srow:35571
25022 chr1 14057436 14057699 wgEncodeRegTfbsClusteredV3 EBF1 score:260, expCount:1, expNums:86, expScores:260, srow:35578
25022 chr1 14057436 14057691 wgEncodeRegTfbsClusteredV3 ELF1 score:799, expCount:1, expNums:88, expScores:799, srow:35577
25022 chr1 14057373 14057736 wgEncodeRegTfbsClusteredV3 ELK1 score:472, expCount:1, expNums:293, expScores:472, srow:35568
25022 chr1 14057195 14057665 wgEncodeRegTfbsClusteredV3 EP300 score:502, expCount:3, expNums:99,304,305, expScores:174,502,269, srow:35548
25022 chr1 14057499 14057722 wgEncodeRegTfbsClusteredV3 ETS1 score:104, expCount:1, expNums:89, expScores:104, srow:35582
25022 chr1 14057101 14057830 wgEncodeRegTfbsClusteredV3 FOXM1 score:297, expCount:1, expNums:90, expScores:243, srow:35540
25022 chr1 14057412 14057727 wgEncodeRegTfbsClusteredV3 GABPA score:1000, expCount:3, expNums:91,180,220, expScores:1000,189,875, srow:35573
25022 chr1 14057434 14057763 wgEncodeRegTfbsClusteredV3 IRF4 score:389, expCount:1, expNums:92, expScores:389, srow:35576
25022 chr1 14057339 14057774 wgEncodeRegTfbsClusteredV3 MAX score:593, expCount:2, expNums:223,296, expScores:506,593, srow:35565
25022 chr1 14057331 14057620 wgEncodeRegTfbsClusteredV3 MEF2A score:215, expCount:1, expNums:93, expScores:215, srow:35564
25022 chr1 14057271 14057566 wgEncodeRegTfbsClusteredV3 MEF2C score:191, expCount:1, expNums:94, expScores:191, srow:35557
25022 chr1 14057265 14057924 wgEncodeRegTfbsClusteredV3 MTA3 score:438, expCount:1, expNums:95, expScores:438, srow:35556
25022 chr1 14057330 14057765 wgEncodeRegTfbsClusteredV3 MXI1 score:899, expCount:1, expNums:298, expScores:899, srow:35563
  • Page 1 of 3
  • 25 of 60 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25022 cellmeth_recounts PrEC: 3, LNCaP: 1, DU145: 0
25022 cellexp id=ENSG00000116731, name=PRDM2, PrEC=3050, str=4239, LNCaP=2463, str=2583, DU145=2002, str=2354
25022 tcgameth site:cg06604289, B=0.36, L=0.66, H=0.61
25022 tcgaexp gene=PRDM2, entrez=7799, pos=chr1:14026735-14151574(+), B=3734, L=3334, M=3193, H=3190
25022 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25022 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305