DMR 25124 chr1:22140751-22141350 (600bp)

DMR Stats
Positionchr1:22140751-22141350 (View on UCSC)
Width600bp
Genomic Contextexon
Nearest GenesLDLRAD2 (0bp away)
ANODEV p-value2.25382051771e-05
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25124 LDLRAD2 396 uc001bfg.1 chr1 22138758 22151714 + 600 100.0 1.28 0 0.0 E1 (0), I1 (23.33), E2 (71), I2 (5.83), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25124 chr1 22138892 22140891 cpgShore — values(x.gr)[overs$srow, ]:1072
25124 chr1 22140821 22141255 wgEncodeRegDnaseClusteredV2 52 score:1000, srow:17476
25124 chr1 22141105 22141428 wgEncodeRegTfbsClusteredV3 BACH1 score:476, expCount:1, expNums:341, expScores:476, srow:57492
25124 chr1 22140944 22140944 cosmic COSM1213247 srow:13266
25124 chr1 22141247 22141247 cosmic COSM1213248 srow:13273
25124 chr1 22141309 22141309 cosmic COSM1295892 srow:13274
25124 chr1 22141079 22141079 cosmic COSM1339038 srow:13270
25124 chr1 22140972 22140972 cosmic COSM338653 srow:13267
25124 chr1 22141030 22141030 cosmic COSM425365 srow:13269
25124 chr1 22141206 22141206 cosmic COSM425366 srow:13272
25124 chr1 22141121 22141121 cosmic COSM532853 srow:13271
25124 chr1 22140931 22140931 cosmic COSM904205 srow:13265
25124 chr1 22141020 22141020 cosmic COSM904206 srow:13268
25124 chr1 22140951 22141381 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:75, expNums:2,5,20,24,35,37,39,42,44,137,174,213,262,290,463,493,595,597,601,603,604,605,606,607,609,615,621,635,638,639,640,641,642,643,644,645,646,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,671,672,673,674,675,676,677,678,679,681,682,683,684,685,686,687,689, expScores:479,626,467,488,177,210,316,296,333,837,259,444,338,265,177,274,156,235,216,559,787,373,259,378,502,122,254,187,113,468,551,313,620,347,444,261,647,659,933,1000,744,1000,740,732,373,926,601,618,157,1000,751,477,218,130,164,395,307,590,472,445,541,506,554,1000,773,820,422,229,476,365,245,679,787,1000,138, srow:57484
25124 chr1 22140892 22141407 cpgIsland CpG: 49 length:516, cpgNum:49, gcNum:351, perCpg:19, perGc:68, obsExp:0.82, srow:611
25124 chr1 22140986 22141229 wgEncodeRegTfbsClusteredV3 EGR1 score:158, expCount:1, expNums:216, expScores:158, srow:57486
25124 chr1 22140925 22141200 wgEncodeRegTfbsClusteredV3 ELF1 score:163, expCount:1, expNums:217, expScores:163, srow:57482
25124 chr1 22140990 22141333 wgEncodeRegTfbsClusteredV3 GABPA score:215, expCount:1, expNums:140, expScores:215, srow:57487
25124 chr1 22141145 22141400 wgEncodeRegTfbsClusteredV3 HDAC2 score:270, expCount:1, expNums:141, expScores:270, srow:57493
25124 chr1 22141012 22141255 wgEncodeRegTfbsClusteredV3 JUND score:138, expCount:1, expNums:142, expScores:138, srow:57488
25124 chr1 22140698 22141751 wgEncodeRegTfbsClusteredV3 POLR2A score:441, expCount:7, expNums:22,146,147,328,332,610,619, expScores:141,412,441,290,321,167,104, srow:57477
25124 chr1 22141053 22141296 wgEncodeRegTfbsClusteredV3 RAD21 score:759, expCount:5, expNums:149,193,231,264,355, expScores:759,261,184,434,296, srow:57491
25124 chr1 22140608 22141277 wgEncodeRegTfbsClusteredV3 RBBP5 score:283, expCount:1, expNums:8, expScores:283, srow:57474
25124 chr1 22140646 22140941 wgEncodeRegTfbsClusteredV3 RCOR1 score:187, expCount:1, expNums:492, expScores:187, srow:57475
25124 chr1 22140849 22141172 wgEncodeRegTfbsClusteredV3 SP1 score:176, expCount:1, expNums:153, expScores:176, srow:57479
  • Page 1 of 4
  • 25 of 76 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25124 cellmeth_recounts PrEC: 22, LNCaP: 53, DU145: 10
25124 cellmeth_diffreps_PrECvsLNCaP A=0, B=31, Length=480, Event=Up, log2FC=Inf, padj=4.50368607357446e-09
25124 cellmeth_diffreps_PrECvsLNCaP A=37, B=7, Length=280, Event=Down, log2FC=-2.4, padj=0.000105030392384157
25124 cellmeth_diffreps_PrECvsDU145 A=39, B=2, Length=400, Event=Down, log2FC=-4.29, padj=1.74472441487967e-08
25124 cellmeth_diffreps_LNCaPvsDU145 A=11.76, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.00547907730955432
25124 cellexp id=ENSG00000187942, name=LDLRAD2, PrEC=11, str=34, LNCaP=0, str=1, DU145=66, str=33
25124 tcgameth site:cg13403586, B=0.06, L=0.35, H=0.32
25124 tcgameth site:cg15467646, B=0.06, L=0.47, H=0.43
25124 tcgameth site:cg17456100, B=0.04, L=0.28, H=0.26
25124 tcgameth site:cg24334174, B=0.87, L=0.92, H=0.91
25124 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25124 tcgaexp gene=LDLRAD2, entrez=401944, pos=chr1:22138758-22151714(+), B=490, L=915, M=505, H=384
25124 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305