DMR 25162 chr1:26527701-26527950 (250bp)

DMR Stats
Positionchr1:26527701-26527950 (View on UCSC)
Width250bp
Genomic Context3' end
Nearest GenesCATSPER4 (0bp away)
ANODEV p-value4.06157805448e-06
FrequenciesBenign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25162 CATSPER4 478 uc009vsf.3 chr1 26517119 26529033 + 250 100.0 0.18 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (57.6), E9 (42.4), I9 (0), E10 (0) 0.0
25162 CATSPER4 478 uc010oey.1 chr1 26517119 26528094 + 250 100.0 0.31 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (57.6), E8 (42.4) 100.0
25162 CATSPER4 478 uc010oez.2 chr1 26517119 26529033 + 250 100.0 0.22 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (57.6), E9 (42.4), I9 (0), E10 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25162 chr1 26527721 26528115 wgEncodeRegDnaseClusteredV2 79 score:1000, srow:21497
25162 chr1 26527800 26528055 wgEncodeRegTfbsClusteredV3 ATF1 score:633, expCount:1, expNums:468, expScores:633, srow:73011
25162 chr1 26527613 26528192 wgEncodeRegTfbsClusteredV3 ATF2 score:417, expCount:1, expNums:134, expScores:417, srow:72982
25162 chr1 26527813 26528048 wgEncodeRegTfbsClusteredV3 ATF3 score:239, expCount:1, expNums:208, expScores:239, srow:73012
25162 chr1 26527617 26527986 wgEncodeRegTfbsClusteredV3 BCLAF1 score:140, expCount:1, expNums:210, expScores:140, srow:72983
25162 chr1 26527418 26527727 wgEncodeRegTfbsClusteredV3 BHLHE40 score:428, expCount:1, expNums:472, expScores:428, srow:72970
25162 chr1 26527641 26528080 wgEncodeRegTfbsClusteredV3 CBX3 score:462, expCount:1, expNums:211, expScores:462, srow:72987
25162 chr1 26527542 26527997 wgEncodeRegTfbsClusteredV3 CCNT2 score:148, expCount:1, expNums:476, expScores:148, srow:72978
25162 chr1 26527797 26528120 wgEncodeRegTfbsClusteredV3 CEBPB score:689, expCount:3, expNums:212,462,477, expScores:491,260,689, srow:73010
25162 chr1 26527203 26527706 wgEncodeRegTfbsClusteredV3 CHD1 score:153, expCount:1, expNums:23, expScores:153, srow:72964
25162 chr1 26527650 26527989 wgEncodeRegTfbsClusteredV3 CHD2 score:251, expCount:1, expNums:479, expScores:251, srow:72989
25162 chr1 26527918 26527918 cosmic COSM1341314 srow:16273
25162 chr1 26527919 26527919 cosmic COSM1341315 srow:16274
25162 chr1 26527920 26527920 cosmic COSM1341316 srow:16276
25162 chr1 26527938 26527938 cosmic COSM1341317 srow:16278
25162 chr1 26527942 26527942 cosmic COSM184115 srow:16279
25162 chr1 26527923 26527923 cosmic COSM309872 srow:16277
25162 chr1 26527920 26527920 cosmic COSM79605 srow:16275
25162 chr1 26527634 26528057 wgEncodeRegTfbsClusteredV3 CTCF score:838, expCount:33, expNums:0,5,20,24,39,137,213,463,493,603,607,609,621,635,639,644,651,653,661,662,663,664,665,667,671,672,673,674,676,678,679,686,688, expScores:290,428,103,713,266,204,517,116,838,140,111,176,537,245,117,113,135,178,269,211,238,142,261,146,105,135,291,150,117,144,343,116,247, srow:72985
25162 chr1 26527774 26528109 wgEncodeRegTfbsClusteredV3 E2F4 score:194, expCount:1, expNums:494, expScores:194, srow:73008
25162 chr1 26527723 26528055 wgEncodeRegTfbsClusteredV3 E2F6 score:910, expCount:2, expNums:215,495, expScores:807,910, srow:73002
25162 chr1 26527612 26527965 wgEncodeRegTfbsClusteredV3 EGR1 score:1000, expCount:2, expNums:138,216, expScores:136,1000, srow:72981
25162 chr1 26527650 26527925 wgEncodeRegTfbsClusteredV3 ELF1 score:189, expCount:1, expNums:217, expScores:189, srow:72988
25162 chr1 26527707 26528022 wgEncodeRegTfbsClusteredV3 EP300 score:421, expCount:1, expNums:519, expScores:421, srow:73000
25162 chr1 26527728 26528037 wgEncodeRegTfbsClusteredV3 GABPA score:304, expCount:1, expNums:220, expScores:304, srow:73003
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  • 25 of 60 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25162 cellmeth_recounts PrEC: 18, LNCaP: 1, DU145: 10
25162 cellmeth_diffreps_PrECvsLNCaP A=26, B=1, Length=380, Event=Down, log2FC=-4.7, padj=4.5123884431573e-06
25162 cellmeth_diffreps_PrECvsDU145 A=24, B=4, Length=200, Event=Down, log2FC=-2.58, padj=0.00252994212801597
25162 cellexp id=ENSG00000188782, name=CATSPER4, PrEC=0, str=0, LNCaP=2, str=1, DU145=1, str=0
25162 tcgaexp gene=CATSPER4, entrez=378807, pos=chr1:26517119-26529033(+), B=0, L=0, M=0, H=0
25162 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305