DMR 25199 chr1:32409801-32410800 (1000bp)

DMR Stats
Positionchr1:32409801-32410800 (View on UCSC)
Width1000bp
Genomic Contextintergenic
Nearest GenesPTP4A2 (5812bp away)
ANODEV p-value4.11807130212e-07
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25199 chr1 32408189 32410188 cpgShore — values(x.gr)[overs$srow, ]:1433
25199 chr1 32410631 32412630 cpgShore — values(x.gr)[overs$srow, ]:1434
25199 chr1 32409901 32410315 wgEncodeRegDnaseClusteredV2 104 score:1000, srow:26291
25199 chr1 32410386 32410695 wgEncodeRegDnaseClusteredV2 105 score:1000, srow:26292
25199 chr1 32409888 32410247 wgEncodeRegTfbsClusteredV3 ARID3A score:173, expCount:1, expNums:467, expScores:173, srow:93675
25199 chr1 32410441 32410676 wgEncodeRegTfbsClusteredV3 ATF3 score:163, expCount:1, expNums:208, expScores:163, srow:93747
25199 chr1 32410363 32410701 wgEncodeRegTfbsClusteredV3 BACH1 score:260, expCount:2, expNums:341,470, expScores:260,214, srow:93742
25199 chr1 32410032 32410658 wgEncodeRegTfbsClusteredV3 BCL3 score:344, expCount:3, expNums:46,83,209, expScores:344,157,126, srow:93725
25199 chr1 32409872 32410405 wgEncodeRegTfbsClusteredV3 BCLAF1 score:229, expCount:2, expNums:84,210, expScores:229,212, srow:93673
25199 chr1 32409918 32410320 wgEncodeRegTfbsClusteredV3 BHLHE40 score:261, expCount:2, expNums:284,472, expScores:261,199, srow:93688
25199 chr1 32410480 32410650 wgEncodeRegTfbsClusteredV3 BHLHE40 score:1000, expCount:1, expNums:472, expScores:1000, srow:93750
25199 chr1 32409991 32410294 wgEncodeRegTfbsClusteredV3 BRCA1 score:183, expCount:1, expNums:374, expScores:183, srow:93716
25199 chr1 32410046 32410759 wgEncodeRegTfbsClusteredV3 CBX3 score:364, expCount:1, expNums:211, expScores:312, srow:93727
25199 chr1 32410045 32410226 wgEncodeRegTfbsClusteredV3 CCNT2 score:423, expCount:1, expNums:476, expScores:423, srow:93726
25199 chr1 32409401 32409916 wgEncodeRegTfbsClusteredV3 CEBPB score:236, expCount:1, expNums:85, expScores:236, srow:93656
25199 chr1 32409930 32410253 wgEncodeRegTfbsClusteredV3 CEBPB score:302, expCount:2, expNums:212,378, expScores:201,302, srow:93695
25199 chr1 32410407 32410999 wgEncodeRegTfbsClusteredV3 CEBPB score:375, expCount:3, expNums:212,378,477, expScores:283,246,375, srow:93743
25199 chr1 32409761 32410196 wgEncodeRegTfbsClusteredV3 CHD1 score:156, expCount:1, expNums:287, expScores:156, srow:93661
25199 chr1 32410214 32410717 wgEncodeRegTfbsClusteredV3 CHD1 score:185, expCount:1, expNums:23, expScores:185, srow:93739
25199 chr1 32409969 32410368 wgEncodeRegTfbsClusteredV3 CHD2 score:598, expCount:4, expNums:288,345,380,479, expScores:598,187,562,379, srow:93706
25199 chr1 32409997 32410276 wgEncodeRegTfbsClusteredV3 CREB1 score:232, expCount:1, expNums:47, expScores:232, srow:93720
25199 chr1 32409760 32410359 wgEncodeRegTfbsClusteredV3 CTBP2 score:133, expCount:1, expNums:348, expScores:133, srow:93660
25199 chr1 32410189 32410630 cpgIsland CpG: 39 length:442, cpgNum:39, gcNum:294, perCpg:17.6, perGc:66.5, obsExp:0.82, srow:801
25199 chr1 32410289 32410798 wgEncodeRegTfbsClusteredV3 E2F6 score:1000, expCount:3, expNums:215,386,495, expScores:956,290,1000, srow:93740
25199 chr1 32409991 32410251 wgEncodeRegTfbsClusteredV3 EGR1 score:1000, expCount:2, expNums:87,216, expScores:361,1000, srow:93714
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Omics Overlaps

Dmrid Omic Set Data Plot
25199 cellmeth_recounts PrEC: 33, LNCaP: 271, DU145: 4
25199 cellmeth_diffreps_PrECvsLNCaP A=29, B=205, Length=1000, Event=Up, log2FC=2.82, padj=0
25199 cellmeth_diffreps_PrECvsDU145 A=30, B=0, Length=400, Event=Down, log2FC=-Inf, padj=1.21014621758047e-08
25199 cellmeth_diffreps_PrECvsDU145 A=14, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.000506195974236337
25199 cellmeth_diffreps_PrECvsDU145 A=28, B=5, Length=200, Event=Down, log2FC=-2.49, padj=0.00112599535425937
25199 cellmeth_diffreps_LNCaPvsDU145 A=244.81, B=7.48, Length=1280, Event=Down, log2FC=-5.03, padj=0
25199 cellexp id=ENSG00000184007, name=PTP4A2, PrEC=10620, str=6229, LNCaP=6667, str=7060, DU145=21329, str=22046
25199 tcgameth site:cg00925616, B=0.32, L=0.65, H=0.64
25199 tcgameth site:cg04881103, B=0.23, L=0.53, H=0.48
25199 tcgameth site:cg11756095, B=0.25, L=0.63, H=0.6
25199 tcgameth site:cg17942618, B=0.7, L=0.74, H=0.73
25199 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305