DMR 25226 chr1:36786651-36787000 (350bp)

DMR Stats
Positionchr1:36786651-36787000 (View on UCSC)
Width350bp
Genomic Context3' end
Nearest GenesSH3D21 (0bp away)
ANODEV p-value0.00465716425097
FrequenciesBenign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25226 SH3D21 653 uc010oia.1 chr1 36771994 36787379 + 350 100.0 0.19 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (1.71), E16 (98.29) 100.0
25226 SH3D21 653 uc010oib.1 chr1 36772708 36787379 + 350 100.0 0.45 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (1.71), E13 (98.29) 100.0
25226 SH3D21 653 uc010oic.1 chr1 36772708 36790484 + 350 100.0 0.19 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (1.71), E9 (44), I9 (54.57), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25226 chr1 36786701 36789970 wgEncodeRegDnaseClusteredV2 124 score:1000, srow:29201
25226 chr1 36786712 36787071 wgEncodeRegTfbsClusteredV3 ARID3A score:172, expCount:1, expNums:467, expScores:172, srow:104394
25226 chr1 36786959 36787328 wgEncodeRegTfbsClusteredV3 BCLAF1 score:150, expCount:1, expNums:210, expScores:150, srow:104426
25226 chr1 36786738 36787047 wgEncodeRegTfbsClusteredV3 BHLHE40 score:297, expCount:1, expNums:472, expScores:297, srow:104400
25226 chr1 36786657 36787318 wgEncodeRegTfbsClusteredV3 CCNT2 score:374, expCount:1, expNums:476, expScores:226, srow:104389
25226 chr1 36786495 36786998 wgEncodeRegTfbsClusteredV3 CHD1 score:211, expCount:1, expNums:23, expScores:211, srow:104383
25226 chr1 36786724 36787063 wgEncodeRegTfbsClusteredV3 CHD2 score:323, expCount:1, expNums:479, expScores:323, srow:104397
25226 chr1 36786720 36786720 cosmic COSM1342300 srow:23916
25226 chr1 36786720 36786720 cosmic COSM1342301 srow:23917
25226 chr1 36786501 36789402 cpgIsland CpG: 219 length:2902, cpgNum:219, gcNum:1863, perCpg:15.1, perGc:64.2, obsExp:0.74, srow:886
25226 chr1 36786773 36787494 wgEncodeRegTfbsClusteredV3 E2F6 score:1000, expCount:2, expNums:215,495, expScores:467,675, srow:104408
25226 chr1 36786664 36787127 wgEncodeRegTfbsClusteredV3 EGR1 score:1000, expCount:3, expNums:87,138,216, expScores:145,152,1000, srow:104390
25226 chr1 36786821 36786942 wgEncodeRegTfbsClusteredV3 ELF1 score:236, expCount:1, expNums:217, expScores:236, srow:104417
25226 chr1 36786725 36787104 wgEncodeRegTfbsClusteredV3 ELK1 score:148, expCount:1, expNums:496, expScores:148, srow:104398
25226 chr1 36786764 36787109 wgEncodeRegTfbsClusteredV3 EP300 score:369, expCount:3, expNums:145,263,519, expScores:174,213,369, srow:104406
25226 chr1 36786798 36786988 wgEncodeRegTfbsClusteredV3 ETS1 score:422, expCount:1, expNums:218, expScores:422, srow:104412
25226 chr1 36786712 36787221 wgEncodeRegTfbsClusteredV3 FOXP2 score:320, expCount:1, expNums:251, expScores:175, srow:104393
25226 chr1 36786981 36787068 wgEncodeRegTfbsClusteredV3 GABPA score:266, expCount:1, expNums:220, expScores:266, srow:104427
25226 chr1 36786207 36786730 wgEncodeRegTfbsClusteredV3 HDAC1 score:221, expCount:1, expNums:26, expScores:221, srow:104380
25226 chr1 36786773 36787036 wgEncodeRegTfbsClusteredV3 HDAC2 score:158, expCount:2, expNums:141,222, expScores:158,148, srow:104407
25226 chr1 36786734 36787229 wgEncodeRegTfbsClusteredV3 HMGN3 score:310, expCount:1, expNums:501, expScores:310, srow:104399
25226 chr1 36786722 36787111 wgEncodeRegTfbsClusteredV3 IRF1 score:436, expCount:2, expNums:505,506, expScores:192,436, srow:104396
25226 chr1 36786779 36787058 wgEncodeRegTfbsClusteredV3 JUND score:264, expCount:1, expNums:507, expScores:264, srow:104409
25226 chr1 36786499 36787074 wgEncodeRegTfbsClusteredV3 KDM5B score:268, expCount:1, expNums:31, expScores:268, srow:104384
25226 chr1 36786678 36787518 wgEncodeRegTfbsClusteredV3 MAX score:1000, expCount:2, expNums:223,511, expScores:832,240, srow:104392
  • Page 1 of 3
  • 25 of 68 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25226 cellmeth_recounts PrEC: 98, LNCaP: 142, DU145: 13
25226 cellmeth_diffreps_PrECvsLNCaP A=259, B=153, Length=340, Event=Down, log2FC=-0.76, padj=8.5206330086452e-06
25226 cellmeth_diffreps_PrECvsDU145 A=603, B=34, Length=1500, Event=Down, log2FC=-4.15, padj=0
25226 cellmeth_diffreps_LNCaPvsDU145 A=415.86, B=31.8, Length=1460, Event=Down, log2FC=-3.71, padj=0
25226 cellexp id=ENSG00000214193, name=SH3D21, PrEC=1236, str=4923, LNCaP=385, str=211, DU145=607, str=584
25226 tcgameth site:cg02993069, B=0.51, L=0.59, H=0.55
25226 tcgaexp gene=SH3D21, entrez=79729, pos=chr1:36771994-36790484(+), B=219, L=278, M=316, H=377
25226 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305