DMR 25353 chr1:53308701-53309450 (750bp)

DMR Stats
Positionchr1:53308701-53309450 (View on UCSC)
Width750bp
Genomic Contextintron
Nearest GenesZYG11A (0bp away)
ANODEV p-value8.85617084792e-06
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25353 ZYG11A 891 uc001cuk.2 chr1 53308183 53360247 + 750 100.0 0.7 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
25353 ZYG11A 891 uc001cul.2 chr1 53308183 53360247 + 750 100.0 0.91 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25353 chr1 53309263 53311262 cpgShore — values(x.gr)[overs$srow, ]:2052
25353 chr1 53308646 53309355 wgEncodeRegDnaseClusteredV2 60 score:661, srow:39977
25353 chr1 53308690 53308925 wgEncodeRegTfbsClusteredV3 ATF3 score:231, expCount:1, expNums:208, expScores:231, srow:143310
25353 chr1 53308340 53308709 wgEncodeRegTfbsClusteredV3 BCLAF1 score:164, expCount:1, expNums:210, expScores:164, srow:143297
25353 chr1 53308347 53309222 wgEncodeRegTfbsClusteredV3 CCNT2 score:434, expCount:1, expNums:476, expScores:110, srow:143298
25353 chr1 53308783 53309286 wgEncodeRegTfbsClusteredV3 CHD1 score:208, expCount:1, expNums:23, expScores:208, srow:143315
25353 chr1 53308682 53308917 wgEncodeRegTfbsClusteredV3 CTCF score:127, expCount:3, expNums:605,607,609, expScores:117,125,127, srow:143309
25353 chr1 53308979 53309211 wgEncodeRegTfbsClusteredV3 CTCF score:192, expCount:2, expNums:597,604, expScores:125,192, srow:143316
25353 chr1 53308295 53309262 cpgIsland CpG: 112 length:968, cpgNum:112, gcNum:653, perCpg:23.1, perGc:67.5, obsExp:1.02, srow:1127
25353 chr1 53308295 53309054 wgEncodeRegTfbsClusteredV3 E2F1 score:480, expCount:3, expNums:384,390,572, expScores:378,480,429, srow:143288
25353 chr1 53308195 53308788 wgEncodeRegTfbsClusteredV3 E2F6 score:1000, expCount:3, expNums:215,386,495, expScores:1000,571,1000, srow:143264
25353 chr1 53309124 53309338 wgEncodeRegTfbsClusteredV3 EGR1 score:925, expCount:1, expNums:216, expScores:925, srow:143318
25353 chr1 53308433 53309553 wgEncodeRegTfbsClusteredV3 EZH2 score:351, expCount:4, expNums:15,19,36,40, expScores:303,126,239,225, srow:143303
25353 chr1 53309422 53309777 wgEncodeRegTfbsClusteredV3 GTF3C2 score:326, expCount:1, expNums:415, expScores:326, srow:143320
25353 chr1 53308438 53309161 wgEncodeRegTfbsClusteredV3 HDAC1 score:404, expCount:1, expNums:26, expScores:357, srow:143304
25353 chr1 53308195 53308890 wgEncodeRegTfbsClusteredV3 HMGN3 score:284, expCount:1, expNums:501, expScores:156, srow:143265
25353 chr1 53307952 53308894 wgEncodeRegTfbsClusteredV3 KDM5B score:319, expCount:1, expNums:31, expScores:280, srow:143255
25353 chr1 53308158 53309054 wgEncodeRegTfbsClusteredV3 MAX score:1000, expCount:9, expNums:223,278,296,352,395,439,460,511,576, expScores:213,503,771,203,824,185,745,1000,531, srow:143260
25353 chr1 53308134 53309054 wgEncodeRegTfbsClusteredV3 MAZ score:416, expCount:2, expNums:297,512, expScores:183,285, srow:143258
25353 chr1 53308713 53309181 wgEncodeRegTfbsClusteredV3 MYC score:247, expCount:4, expNums:486,487,620,624, expScores:115,171,149,247, srow:143313
25353 chr1 53308378 53309309 wgEncodeRegTfbsClusteredV3 PHF8 score:1000, expCount:1, expNums:30, expScores:1000, srow:143301
25353 chr1 53307987 53309513 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:38, expNums:32,61,62,78,104,105,130,131,168,206,228,229,259,283,306,307,328,330,332,334,338,340,366,402,403,520,521,522,523,524,525,577,596,599,613,622,632,633, expScores:295,1000,789,211,458,498,469,709,491,321,220,902,239,122,420,134,682,523,693,254,421,504,173,432,264,310,298,293,598,190,644,152,244,161,182,244,342,366, srow:143256
25353 chr1 53308292 53309197 wgEncodeRegTfbsClusteredV3 RBBP5 score:561, expCount:2, expNums:8,33, expScores:190,379, srow:143285
25353 chr1 53308243 53308771 wgEncodeRegTfbsClusteredV3 RCOR1 score:474, expCount:3, expNums:289,383,492, expScores:474,194,365, srow:143272
25353 chr1 53309394 53309849 wgEncodeRegTfbsClusteredV3 RPC155 score:488, expCount:1, expNums:407, expScores:488, srow:143319
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  • 25 of 37 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25353 cellmeth_recounts PrEC: 5, LNCaP: 238, DU145: 0
25353 cellmeth_diffreps_PrECvsLNCaP A=6, B=199, Length=920, Event=Up, log2FC=5.05, padj=0
25353 cellmeth_diffreps_PrECvsDU145 A=15, B=0, Length=320, Event=Down, log2FC=-Inf, padj=0.000269565104641442
25353 cellmeth_diffreps_LNCaPvsDU145 A=213.81, B=0, Length=1000, Event=Down, log2FC=-Inf, padj=0
25353 cellexp id=ENSG00000203995, name=ZYG11A, PrEC=38, str=7, LNCaP=38, str=77, DU145=814, str=921
25353 tcgameth site:cg00397635, B=0.25, L=0.61, H=0.52
25353 tcgameth site:cg06784991, B=0.23, L=0.46, H=0.44
25353 tcgameth site:cg18184411, B=0.28, L=0.56, H=0.49
25353 tcgameth site:cg24466241, B=0.25, L=0.5, H=0.42
25353 tcgaexp gene=ZYG11A, entrez=440590, pos=chr1:53308183-53360247(+), B=115, L=208, M=185, H=295
25353 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305