DMR 25868 chr1:228246551-228247200 (650bp)

DMR Stats
Positionchr1:228246551-228247200 (View on UCSC)
Width650bp
Genomic Context3' end
Nearest GenesWNT3A (0bp away)
ANODEV p-value0.00212354790097
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25868 WNT3A 2661 uc001hrp.2 chr1 228194723 228248168 + 650 100.0 0.18 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (20.92), E4 (73.23), I4 (6), E5 (0) 4.92
25868 WNT3A 2661 uc001hrq.2 chr1 228194723 228248972 + 650 100.0 0.03 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (20.92), E4 (79.08) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25868 chr1 228244632 228246631 cpgShore — values(x.gr)[overs$srow, ]:4214
25868 chr1 228247198 228249197 cpgShore — values(x.gr)[overs$srow, ]:4215
25868 chr1 228246886 228247175 wgEncodeRegDnaseClusteredV2 12 score:629, srow:109053
25868 chr1 228246481 228246775 wgEncodeRegDnaseClusteredV2 4 score:272, srow:109052
25868 chr1 228247186 228247955 wgEncodeRegDnaseClusteredV2 78 score:1000, srow:109054
25868 chr1 228246881 228246881 cosmic COSM1160899 srow:113782
25868 chr1 228246726 228246726 cosmic COSM1339435 srow:113775
25868 chr1 228246914 228246914 cosmic COSM1339436 srow:113783
25868 chr1 228246937 228246937 cosmic COSM1501365 srow:113785
25868 chr1 228246923 228246923 cosmic COSM1501366 srow:113784
25868 chr1 228246785 228246785 cosmic COSM1501367 srow:113780
25868 chr1 228246761 228246761 cosmic COSM1601782 srow:113778
25868 chr1 228246733 228246733 cosmic COSM425497 srow:113776
25868 chr1 228246812 228246812 cosmic COSM425498 srow:113781
25868 chr1 228246774 228246774 cosmic COSM464076 srow:113779
25868 chr1 228246752 228246752 cosmic COSM904929 srow:113777
25868 chr1 228246978 228246978 cosmic COSM904930 srow:113786
25868 chr1 228246632 228247197 cpgIsland CpG: 66 length:566, cpgNum:66, gcNum:392, perCpg:23.3, perGc:69.3, obsExp:0.97, srow:2286
25868 chr1 228246280 228247306 wgEncodeRegTfbsClusteredV3 EZH2 score:512, expCount:5, expNums:15,21,36,38,40, expScores:302,404,346,210,304, srow:401205
25868 chr1 228246971 228247314 wgEncodeRegTfbsClusteredV3 GABPA score:185, expCount:1, expNums:140, expScores:185, srow:401208
25868 chr1 228246827 228247290 wgEncodeRegTfbsClusteredV3 POLR2A score:243, expCount:1, expNums:78, expScores:243, srow:401206
25868 chr1 228247130 228247145 tfbsConsSites V$AHRARNT_01 score:848, zScore:2.03, srow:475279
25868 chr1 228246989 228247000 tfbsConsSites V$AREB6_03 score:898, zScore:2.04, srow:475271
25868 chr1 228246875 228246890 tfbsConsSites V$ARNT_01 score:877, zScore:2.37, srow:475270
25868 chr1 228247110 228247121 tfbsConsSites V$CREBP1_Q2 score:882, zScore:2.42, srow:475275
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  • 25 of 64 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25868 cellmeth_recounts PrEC: 77, LNCaP: 348, DU145: 12
25868 cellmeth_diffreps_PrECvsLNCaP A=75, B=235, Length=640, Event=Up, log2FC=1.65, padj=0
25868 cellmeth_diffreps_PrECvsDU145 A=115, B=9, Length=760, Event=Down, log2FC=-3.68, padj=0
25868 cellmeth_diffreps_LNCaPvsDU145 A=308.95, B=8.42, Length=1120, Event=Down, log2FC=-5.2, padj=0
25868 cellexp id=ENSG00000154342, name=WNT3A, PrEC=0, str=14, LNCaP=1, str=0, DU145=10, str=5
25868 tcgameth site:cg09075558, B=0.5, L=0.57, H=0.61
25868 tcgameth site:cg09511896, B=0.36, L=0.48, H=0.48
25868 tcgameth site:cg12359809, B=0.49, L=0.63, H=0.63
25868 tcgameth site:cg23663760, B=0.24, L=0.27, H=0.26
25868 tcgaexp gene=WNT3A, entrez=89780, pos=chr1:228194723-228248972(+), B=193, L=87, M=92, H=58