DMR 26174 chr2:45171251-45172300 (1050bp)

DMR Stats
Positionchr2:45171251-45172300 (View on UCSC)
Width1050bp
Genomic Context3' end
Nearest GenesSIX3 (0bp away)
ANODEV p-value2.00551284512e-06
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26174 SIX3 16293 uc002run.2 chr2 45169037 45173216 + 1050 100.0 0.09 0 0.0 E1 (0), I1 (43.43), E2 (56.57) 8.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26174 chr2 45171885 45173884 cpgShore — values(x.gr)[overs$srow, ]:26857
26174 chr2 45172126 45172275 wgEncodeRegDnaseClusteredV2 2 score:342, srow:617206
26174 chr2 45171341 45172075 wgEncodeRegDnaseClusteredV2 31 score:682, srow:617205
26174 chr2 45170914 45171782 wgEncodeRegTfbsClusteredV3 CHD1 score:438, expCount:1, expNums:4, expScores:272, srow:2164554
26174 chr2 45171878 45171878 cosmic COSM1306822 srow:645048
26174 chr2 45171841 45171841 cosmic COSM300499 srow:645047
26174 chr2 45170857 45172221 wgEncodeRegTfbsClusteredV3 CTBP2 score:214, expCount:1, expNums:348, expScores:165, srow:2164553
26174 chr2 45170931 45171251 wgEncodeRegTfbsClusteredV3 CTCF score:362, expCount:2, expNums:645,687, expScores:329,362, srow:2164555
26174 chr2 45171408 45171631 wgEncodeRegTfbsClusteredV3 CTCF score:144, expCount:1, expNums:687, expScores:144, srow:2164557
26174 chr2 45169506 45171884 cpgIsland CpG: 171 length:2379, cpgNum:171, gcNum:1484, perCpg:14.4, perGc:62.4, obsExp:0.74, srow:14933
26174 chr2 45171845 45172120 wgEncodeRegTfbsClusteredV3 EGR1 score:169, expCount:1, expNums:138, expScores:169, srow:2164563
26174 chr2 45167845 45172492 wgEncodeRegTfbsClusteredV3 EZH2 score:691, expCount:11, expNums:3,6,13,15,17,19,21,36,38,40,43, expScores:135,322,443,292,162,103,405,246,249,266,382, srow:2164539
26174 chr2 45171530 45172199 wgEncodeRegTfbsClusteredV3 RBBP5 score:193, expCount:1, expNums:8, expScores:193, srow:2164558
26174 chr2 45171622 45171865 wgEncodeRegTfbsClusteredV3 REST score:209, expCount:1, expNums:144, expScores:209, srow:2164559
26174 chr2 45171651 45172170 wgEncodeRegTfbsClusteredV3 SIN3A score:178, expCount:1, expNums:357, expScores:178, srow:2164560
26174 chr2 45171386 45172288 wgEncodeRegTfbsClusteredV3 SUZ12 score:256, expCount:2, expNums:358,578, expScores:153,131, srow:2164556
26174 chr2 45171763 45172012 wgEncodeRegTfbsClusteredV3 TEAD4 score:237, expCount:1, expNums:160, expScores:237, srow:2164561
26174 chr2 45172280 45172295 tfbsConsSites V$AHRARNT_01 score:841, zScore:1.89, srow:2615691
26174 chr2 45171764 45171781 tfbsConsSites V$AHR_01 score:769, zScore:1.74, srow:2615672
26174 chr2 45171751 45171768 tfbsConsSites V$AP4_01 score:812, zScore:1.68, srow:2615670
26174 chr2 45171826 45171839 tfbsConsSites V$ATF_01 score:827, zScore:1.74, srow:2615675
26174 chr2 45171827 45171838 tfbsConsSites V$CREBP1_Q2 score:840, zScore:1.7, srow:2615676
26174 chr2 45171827 45171838 tfbsConsSites V$CREB_Q2 score:868, zScore:2.07, srow:2615677
26174 chr2 45172283 45172297 tfbsConsSites V$E47_01 score:856, zScore:1.66, srow:2615692
26174 chr2 45172085 45172094 tfbsConsSites V$FOXO1_01 score:966, zScore:1.94, srow:2615682
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  • 25 of 57 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26174 cellmeth_recounts PrEC: 63, LNCaP: 515, DU145: 78
26174 cellmeth_diffreps_PrECvsLNCaP A=63, B=375, Length=780, Event=Up, log2FC=2.57, padj=0
26174 cellmeth_diffreps_PrECvsDU145 A=42, B=11, Length=340, Event=Down, log2FC=-1.93, padj=0.000523743958488681
26174 cellmeth_diffreps_PrECvsDU145 A=2, B=24, Length=260, Event=Up, log2FC=3.58, padj=0.000159268381260165
26174 cellmeth_diffreps_LNCaPvsDU145 A=422.27, B=45.84, Length=920, Event=Down, log2FC=-3.2, padj=0
26174 cellexp id=ENSG00000138083, name=SIX3, PrEC=0, str=2, LNCaP=7, str=3, DU145=246, str=65
26174 tcgameth site:cg00097146, B=0.19, L=0.58, H=0.55
26174 tcgameth site:cg02120584, B=0.51, L=0.71, H=0.68
26174 tcgameth site:cg02649597, B=0.24, L=0.52, H=0.51
26174 tcgameth site:cg03717442, B=0.8, L=0.87, H=0.87
26174 tcgaexp gene=SIX3, entrez=6496, pos=chr2:45169037-45173216(+), B=0, L=0, M=1, H=2