DMR Stats | |
---|---|
Position | chr2:105473001-105473300 (View on UCSC) |
Width | 300bp |
Genomic Context | 3' end |
Nearest Genes | POU3F3 (0bp away) |
ANODEV p-value | 0.000287676041294 |
Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
26379 | POU3F3 | 16779 | uc010ywg.2 | chr2 | 105471969 | 105473471 | + | 300 | 100.0 | 0.05 | 0 | 0.0 | E1 (100) | 100.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
26379 | chr2 | 105472941 | 105473495 | wgEncodeRegDnaseClusteredV2 | 40 | score:464, srow:640403 |
26379 | chr2 | 105472912 | 105473527 | wgEncodeRegTfbsClusteredV3 | CHD1 | score:305, expCount:1, expNums:4, expScores:305, srow:2251876 |
26379 | chr2 | 105473018 | 105473018 | cosmic | COSM1004731 | srow:664970 |
26379 | chr2 | 105473057 | 105473057 | cosmic | COSM1004732 | srow:664977 |
26379 | chr2 | 105473061 | 105473061 | cosmic | COSM1004733 | srow:664978 |
26379 | chr2 | 105473102 | 105473102 | cosmic | COSM1004734 | srow:664979 |
26379 | chr2 | 105473129 | 105473129 | cosmic | COSM1004735 | srow:664980 |
26379 | chr2 | 105473006 | 105473006 | cosmic | COSM121614 | srow:664968 |
26379 | chr2 | 105473009 | 105473009 | cosmic | COSM1398563 | srow:664969 |
26379 | chr2 | 105473034 | 105473034 | cosmic | COSM1398564 | srow:664973 |
26379 | chr2 | 105473035 | 105473035 | cosmic | COSM1398565 | srow:664974 |
26379 | chr2 | 105473170 | 105473170 | cosmic | COSM1398566 | srow:664981 |
26379 | chr2 | 105473217 | 105473217 | cosmic | COSM1398567 | srow:664986 |
26379 | chr2 | 105473256 | 105473256 | cosmic | COSM145799 | srow:664987 |
26379 | chr2 | 105473175 | 105473175 | cosmic | COSM1731864 | srow:664982 |
26379 | chr2 | 105473049 | 105473049 | cosmic | COSM322756 | srow:664976 |
26379 | chr2 | 105473019 | 105473019 | cosmic | COSM328844 | srow:664971 |
26379 | chr2 | 105473188 | 105473188 | cosmic | COSM359491 | srow:664984 |
26379 | chr2 | 105473215 | 105473215 | cosmic | COSM378304 | srow:664985 |
26379 | chr2 | 105473177 | 105473177 | cosmic | COSM390570 | srow:664983 |
26379 | chr2 | 105473297 | 105473297 | cosmic | COSM397677 | srow:664988 |
26379 | chr2 | 105473021 | 105473021 | cosmic | COSM714910 | srow:664972 |
26379 | chr2 | 105473036 | 105473036 | cosmic | COSM80375 | srow:664975 |
26379 | chr2 | 105472936 | 105473535 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:141, expCount:1, expNums:348, expScores:141, srow:2251877 |
26379 | chr2 | 105468852 | 105473488 | cpgIsland | CpG: 334 | length:4637, cpgNum:334, gcNum:2430, perCpg:14.4, perGc:52.4, obsExp:1.05, srow:15326 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
26379 | cellmeth_recounts | PrEC: 1, LNCaP: 1155, DU145: 33 | |
26379 | cellmeth_diffreps_PrECvsLNCaP | A=34, B=3498, Length=4060, Event=Up, log2FC=6.68, padj=0 | |
26379 | cellmeth_diffreps_PrECvsDU145 | A=1, B=24, Length=300, Event=Up, log2FC=4.58, padj=2.0670567223746e-05 | |
26379 | cellmeth_diffreps_LNCaPvsDU145 | A=3737.38, B=115.06, Length=4000, Event=Down, log2FC=-5.02, padj=0 | |
26379 | cellexp | id=ENSG00000198914, name=POU3F3, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 | |
26379 | cellexp | id=ENSG00000269707, name=RP11-13J10.1, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 | |
26379 | tcgameth | site:cg16767916, B=0.42, L=0.61, H=0.59 | |
26379 | tcgaexp | gene=POU3F3, entrez=5455, pos=chr2:105471969-105473471(+), B=252, L=0, M=1, H=1 |