DMR 26543 chr2:171572651-171573550 (900bp)

DMR Stats
Positionchr2:171572651-171573550 (View on UCSC)
Width900bp
Genomic Context3' end
Nearest GenesSP5 (0bp away)
ANODEV p-value7.96121680583e-06
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26543 SP5 17256 uc002uge.3 chr2 171571857 171574498 + 900 100.0 0.41 0 0.0 E1 (0), I1 (13.11), E2 (86.89) 5.78
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26543 chr2 171571601 171573215 wgEncodeRegDnaseClusteredV2 109 score:1000, srow:664855
26543 chr2 171573366 171574175 wgEncodeRegDnaseClusteredV2 72 score:1000, srow:664856
26543 chr2 171573294 171573673 wgEncodeRegTfbsClusteredV3 ARID3A score:160, expCount:1, expNums:422, expScores:160, srow:2326682
26543 chr2 171573474 171573737 wgEncodeRegTfbsClusteredV3 BHLHE40 score:1000, expCount:3, expNums:171,276,423, expScores:88,213,1000, srow:2326694
26543 chr2 171573158 171573433 wgEncodeRegTfbsClusteredV3 CEBPD score:112, expCount:1, expNums:173, expScores:112, srow:2326676
26543 chr2 171573185 171573185 cosmic COSM1133002 srow:688233
26543 chr2 171573413 171573413 cosmic COSM1401222 srow:688234
26543 chr2 171572822 171572822 cosmic COSM1613684 srow:688230
26543 chr2 171572836 171572836 cosmic COSM247534 srow:688231
26543 chr2 171573115 171573115 cosmic COSM397176 srow:688232
26543 chr2 171573300 171573891 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:68, expNums:2,5,12,14,16,18,20,35,37,39,42,44,48,49,137,174,262,290,463,595,597,601,605,607,609,615,618,635,636,638,639,640,642,643,644,645,646,647,652,653,654,655,656,657,658,659,660,661,662,664,665,667,668,669,671,672,673,674,675,676,677,678,682,683,684,685,686,687, expScores:219,718,444,150,428,104,641,150,586,142,306,345,255,231,1000,664,317,132,364,1000,912,160,548,172,551,133,142,573,466,272,665,370,557,260,274,119,198,418,287,439,439,138,101,517,431,549,117,665,458,116,577,605,120,397,414,339,260,267,151,588,823,495,583,322,118,452,376,890, srow:2326684
26543 chr2 171569878 171573904 cpgIsland CpG: 331 length:4027, cpgNum:331, gcNum:2448, perCpg:16.4, perGc:60.8, obsExp:0.89, srow:15691
26543 chr2 171572808 171573083 wgEncodeRegTfbsClusteredV3 EGR1 score:179, expCount:1, expNums:138, expScores:179, srow:2326675
26543 chr2 171573258 171573691 wgEncodeRegTfbsClusteredV3 EP300 score:154, expCount:2, expNums:145,190, expScores:150,154, srow:2326679
26543 chr2 171568872 171574381 wgEncodeRegTfbsClusteredV3 EZH2 score:882, expCount:10, expNums:3,6,15,17,19,21,36,38,40,43, expScores:157,666,261,201,100,424,239,238,226,262, srow:2326578
26543 chr2 171573323 171573618 wgEncodeRegTfbsClusteredV3 HNF4A score:502, expCount:2, expNums:182,432, expScores:356,502, srow:2326685
26543 chr2 171573296 171573585 wgEncodeRegTfbsClusteredV3 HNF4G score:211, expCount:1, expNums:183, expScores:211, srow:2326683
26543 chr2 171573419 171573805 wgEncodeRegTfbsClusteredV3 MAX score:686, expCount:3, expNums:278,352,439, expScores:162,686,263, srow:2326692
26543 chr2 171573271 171573660 wgEncodeRegTfbsClusteredV3 MAZ score:157, expCount:1, expNums:440, expScores:157, srow:2326681
26543 chr2 171573389 171573788 wgEncodeRegTfbsClusteredV3 MXI1 score:477, expCount:1, expNums:441, expScores:477, srow:2326689
26543 chr2 171573412 171573661 wgEncodeRegTfbsClusteredV3 MYC score:194, expCount:1, expNums:614, expScores:194, srow:2326691
26543 chr2 171570725 171573237 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:12, expNums:191,192,229,445,446,447,522,523,524,525,616,622, expScores:628,693,872,380,352,293,192,344,181,219,276,211, srow:2326586
26543 chr2 171573259 171574229 wgEncodeRegTfbsClusteredV3 POLR2A score:824, expCount:4, expNums:191,192,445,446, expScores:251,239,91,229, srow:2326680
26543 chr2 171573356 171573630 wgEncodeRegTfbsClusteredV3 RAD21 score:1000, expCount:5, expNums:149,193,264,355,448, expScores:1000,470,428,533,428, srow:2326688
26543 chr2 171573412 171573759 wgEncodeRegTfbsClusteredV3 REST score:187, expCount:2, expNums:144,188, expScores:183,187, srow:2326690
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  • 25 of 148 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26543 cellmeth_recounts PrEC: 101, LNCaP: 3185, DU145: 26
26543 cellmeth_diffreps_PrECvsLNCaP A=402, B=4269, Length=2660, Event=Up, log2FC=3.41, padj=0
26543 cellmeth_diffreps_PrECvsDU145 A=395, B=41, Length=1480, Event=Down, log2FC=-3.27, padj=0
26543 cellmeth_diffreps_LNCaPvsDU145 A=4563.75, B=46.77, Length=2640, Event=Down, log2FC=-6.61, padj=0
26543 cellexp id=ENSG00000204335, name=SP5, PrEC=4, str=0, LNCaP=2, str=0, DU145=98, str=73
26543 tcgameth site:cg01042246, B=0.21, L=0.49, H=0.46
26543 tcgameth site:cg01571735, B=0.14, L=0.51, H=0.47
26543 tcgameth site:cg12045337, B=0.15, L=0.45, H=0.39
26543 tcgameth site:cg18798922, B=0.11, L=0.35, H=0.32
26543 tcgameth site:cg24772753, B=0.47, L=0.71, H=0.7
26543 tcgaexp gene=SP5, entrez=389058, pos=chr2:171571857-171574498(+), B=174, L=495, M=434, H=410