DMR 26620 chr2:201450451-201451650 (1200bp)

DMR Stats
Positionchr2:201450451-201451650 (View on UCSC)
Width1200bp
Genomic Contextpromoter
Nearest GenesAOX1 (0bp away)
ANODEV p-value1.87223150871e-08
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
26620 AOX1 17443 uc002uvx.3 chr2 201450731 201536217 + 920 76.67 0.12 0 65.0 E1 (12.17), I1 (64.58), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0), I34 (0), E35 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
26620 chr2 201448527 201450526 cpgShore — values(x.gr)[overs$srow, ]:28560
26620 chr2 201451028 201453027 cpgShore — values(x.gr)[overs$srow, ]:28561
26620 chr2 201450321 201451455 wgEncodeRegDnaseClusteredV2 99 score:633, srow:675326
26620 chr2 201450490 201450785 wgEncodeRegTfbsClusteredV3 BHLHE40 score:641, expCount:2, expNums:171,423, expScores:104,641, srow:2366508
26620 chr2 201450843 201450843 cosmic COSM294120 srow:714750
26620 chr2 201450857 201450857 cosmic COSM476733 srow:714751
26620 chr2 201450355 201451403 wgEncodeRegTfbsClusteredV3 CTCF score:634, expCount:52, expNums:5,12,18,37,39,44,48,174,595,597,598,601,603,604,605,607,609,615,618,627,628,629,630,631,635,636,639,640,641,642,643,645,646,657,658,659,661,662,665,667,668,669,671,672,673,674,675,676,678,682,685,687, expScores:192,385,105,182,166,125,88,254,427,245,451,138,175,162,301,269,148,251,146,267,185,446,378,355,138,430,310,218,87,183,156,123,155,274,213,169,219,414,138,139,125,184,133,104,338,120,180,209,95,182,249,248, srow:2366496
26620 chr2 201450527 201451027 cpgIsland CpG: 47 length:501, cpgNum:47, gcNum:328, perCpg:18.8, perGc:65.5, obsExp:0.88, srow:15861
26620 chr2 201450479 201450722 wgEncodeRegTfbsClusteredV3 EGR1 score:483, expCount:3, expNums:87,138,216, expScores:221,483,214, srow:2366504
26620 chr2 201450500 201450775 wgEncodeRegTfbsClusteredV3 ELF1 score:155, expCount:1, expNums:175, expScores:155, srow:2366509
26620 chr2 201450561 201450820 wgEncodeRegTfbsClusteredV3 FOSL2 score:175, expCount:1, expNums:176, expScores:175, srow:2366512
26620 chr2 201450426 201450765 wgEncodeRegTfbsClusteredV3 HDAC2 score:167, expCount:1, expNums:181, expScores:167, srow:2366501
26620 chr2 201450589 201450884 wgEncodeRegTfbsClusteredV3 HNF4A score:297, expCount:2, expNums:182,432, expScores:297,172, srow:2366514
26620 chr2 201450567 201450856 wgEncodeRegTfbsClusteredV3 HNF4G score:246, expCount:1, expNums:183, expScores:246, srow:2366513
26620 chr2 201450552 201450807 wgEncodeRegTfbsClusteredV3 JUND score:217, expCount:1, expNums:184, expScores:217, srow:2366511
26620 chr2 201450443 201450778 wgEncodeRegTfbsClusteredV3 MAX score:375, expCount:2, expNums:352,439, expScores:375,340, srow:2366503
26620 chr2 201450704 201451093 wgEncodeRegTfbsClusteredV3 MAZ score:141, expCount:1, expNums:440, expScores:141, srow:2366518
26620 chr2 201450433 201450832 wgEncodeRegTfbsClusteredV3 MXI1 score:513, expCount:2, expNums:353,441, expScores:337,513, srow:2366502
26620 chr2 201450481 201450730 wgEncodeRegTfbsClusteredV3 MYC score:241, expCount:1, expNums:614, expScores:241, srow:2366505
26620 chr2 201450385 201451160 wgEncodeRegTfbsClusteredV3 POLR2A score:503, expCount:7, expNums:146,147,191,192,445,446,610, expScores:253,503,273,469,160,257,194, srow:2366498
26620 chr2 201450488 201450711 wgEncodeRegTfbsClusteredV3 RAD21 score:281, expCount:1, expNums:193, expScores:281, srow:2366507
26620 chr2 201450807 201450943 wgEncodeRegTfbsClusteredV3 RAD21 score:497, expCount:1, expNums:193, expScores:497, srow:2366520
26620 chr2 201451127 201451366 wgEncodeRegTfbsClusteredV3 RAD21 score:177, expCount:1, expNums:149, expScores:177, srow:2366521
26620 chr2 201450596 201450965 wgEncodeRegTfbsClusteredV3 RCOR1 score:180, expCount:1, expNums:429, expScores:180, srow:2366516
26620 chr2 201450371 201450890 wgEncodeRegTfbsClusteredV3 SIN3A score:337, expCount:1, expNums:357, expScores:337, srow:2366497
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  • 25 of 37 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
26620 cellmeth_recounts PrEC: 6, LNCaP: 53, DU145: 13
26620 cellmeth_diffreps_PrECvsLNCaP A=0, B=31, Length=600, Event=Up, log2FC=Inf, padj=4.50368607357446e-09
26620 cellmeth_diffreps_LNCaPvsDU145 A=17.1, B=0.94, Length=220, Event=Down, log2FC=-4.19, padj=0.00311648242974852
26620 cellexp id=ENSG00000138356, name=AOX1, PrEC=1023, str=1902, LNCaP=13, str=32, DU145=469, str=462
26620 tcgameth site:cg02144933, B=0.08, L=0.4, H=0.43
26620 tcgameth site:cg02657832, B=0.1, L=0.36, H=0.41
26620 tcgameth site:cg04380340, B=0.1, L=0.51, H=0.54
26620 tcgameth site:cg08266417, B=0.04, L=0.46, H=0.47
26620 tcgameth site:cg08952506, B=0.09, L=0.45, H=0.47
26620 tcgameth site:cg09729613, B=0.07, L=0.48, H=0.47
26620 tcgameth site:cg12627583, B=0.15, L=0.57, H=0.58
26620 tcgameth site:cg13000082, B=0.12, L=0.54, H=0.55
26620 tcgameth site:cg13875120, B=0.06, L=0.59, H=0.63
26620 tcgameth site:cg14383422, B=0.21, L=0.66, H=0.64
26620 tcgameth site:cg22953017, B=0.39, L=0.54, H=0.55
26620 tcgameth site:cg24569637, B=0.04, L=0.4, H=0.45
26620 tcgaexp gene=AOX1, entrez=316, pos=chr2:201450731-201536217(+), B=5499, L=1572, M=1303, H=947