DMR 27108 chr3:124860351-124861100 (750bp)

DMR Stats
Positionchr3:124860351-124861100 (View on UCSC)
Width750bp
Genomic Contextintron
Nearest GenesSLC12A8 (0bp away)
ANODEV p-value3.34240443869e-09
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
27108 SLC12A8 20639 uc003ehv.4 chr3 124801480 124931609 - 750 100.0 0.1 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
27108 SLC12A8 20639 uc003ehw.4 chr3 124801480 124998091 - 750 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
27108 SLC12A8 20639 uc010hrz.1 chr3 124837613 124931609 - 750 100.0 0.35 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
27108 chr3 124858570 124860569 cpgShore — values(x.gr)[overs$srow, ]:34046
27108 chr3 124861020 124863019 cpgShore — values(x.gr)[overs$srow, ]:34047
27108 chr3 124860326 124861315 wgEncodeRegDnaseClusteredV2 89 score:1000, srow:831610
27108 chr3 124860328 124860667 wgEncodeRegTfbsClusteredV3 ATF2 score:610, expCount:1, expNums:79, expScores:610, srow:2874520
27108 chr3 124860660 124860983 wgEncodeRegTfbsClusteredV3 BACH1 score:160, expCount:1, expNums:341, expScores:160, srow:2874537
27108 chr3 124860347 124860568 wgEncodeRegTfbsClusteredV3 BATF score:918, expCount:1, expNums:81, expScores:918, srow:2874525
27108 chr3 124860352 124860591 wgEncodeRegTfbsClusteredV3 BCL11A score:658, expCount:1, expNums:82, expScores:658, srow:2874526
27108 chr3 124860326 124860631 wgEncodeRegTfbsClusteredV3 BCL3 score:339, expCount:1, expNums:83, expScores:339, srow:2874519
27108 chr3 124860246 124860575 wgEncodeRegTfbsClusteredV3 BHLHE40 score:430, expCount:1, expNums:284, expScores:430, srow:2874510
27108 chr3 124860203 124860718 wgEncodeRegTfbsClusteredV3 CEBPB score:347, expCount:1, expNums:85, expScores:347, srow:2874505
27108 chr3 124860280 124860659 wgEncodeRegTfbsClusteredV3 CHD2 score:188, expCount:1, expNums:288, expScores:188, srow:2874514
27108 chr3 124860712 124861141 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:56, expNums:2,5,20,37,39,42,44,137,290,597,601,603,604,605,606,607,609,618,635,636,639,640,641,642,643,644,645,646,648,650,651,652,653,654,655,656,657,658,659,660,661,662,664,668,669,672,673,674,675,676,677,678,682,685,686,687, expScores:486,318,195,170,133,138,111,249,819,486,680,1000,1000,1000,787,1000,229,93,593,231,369,137,128,384,201,104,166,378,668,795,748,632,814,600,571,363,153,113,282,129,333,367,109,133,170,293,317,186,337,380,540,239,158,169,433,284, srow:2874539
27108 chr3 124860570 124861019 cpgIsland CpG: 48 length:450, cpgNum:48, gcNum:313, perCpg:21.3, perGc:69.6, obsExp:0.89, srow:18841
27108 chr3 124860142 124860552 wgEncodeRegTfbsClusteredV3 EBF1 score:1000, expCount:2, expNums:86,292, expScores:1000,436, srow:2874502
27108 chr3 124860408 124860549 wgEncodeRegTfbsClusteredV3 EGR1 score:567, expCount:1, expNums:87, expScores:567, srow:2874532
27108 chr3 124860787 124861026 wgEncodeRegTfbsClusteredV3 EGR1 score:168, expCount:1, expNums:87, expScores:168, srow:2874547
27108 chr3 124860342 124860646 wgEncodeRegTfbsClusteredV3 ELF1 score:462, expCount:1, expNums:88, expScores:462, srow:2874523
27108 chr3 124860293 124860682 wgEncodeRegTfbsClusteredV3 EP300 score:493, expCount:3, expNums:99,304,305, expScores:408,493,385, srow:2874517
27108 chr3 124860259 124860722 wgEncodeRegTfbsClusteredV3 FOXM1 score:928, expCount:1, expNums:90, expScores:928, srow:2874511
27108 chr3 124860430 124861019 wgEncodeRegTfbsClusteredV3 IKZF1 score:227, expCount:1, expNums:294, expScores:227, srow:2874535
27108 chr3 124860430 124860514 wgEncodeRegTfbsClusteredV3 IRF4 score:270, expCount:1, expNums:92, expScores:270, srow:2874534
27108 chr3 124860192 124860832 wgEncodeRegTfbsClusteredV3 MAZ score:377, expCount:1, expNums:297, expScores:213, srow:2874504
27108 chr3 124860341 124860642 wgEncodeRegTfbsClusteredV3 MEF2A score:1000, expCount:1, expNums:93, expScores:1000, srow:2874522
27108 chr3 124860345 124860633 wgEncodeRegTfbsClusteredV3 MEF2C score:1000, expCount:1, expNums:94, expScores:1000, srow:2874524
27108 chr3 124860241 124860720 wgEncodeRegTfbsClusteredV3 MTA3 score:418, expCount:1, expNums:95, expScores:418, srow:2874508
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  • 25 of 68 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
27108 cellmeth_recounts PrEC: 25, LNCaP: 285, DU145: 17
27108 cellmeth_diffreps_PrECvsLNCaP A=0, B=20, Length=280, Event=Up, log2FC=Inf, padj=7.90773854123128e-06
27108 cellmeth_diffreps_PrECvsLNCaP A=33, B=205, Length=640, Event=Up, log2FC=2.64, padj=0
27108 cellmeth_diffreps_LNCaPvsDU145 A=241.6, B=12.16, Length=940, Event=Down, log2FC=-4.31, padj=0
27108 cellexp id=ENSG00000221955, name=SLC12A8, PrEC=1006, str=1530, LNCaP=2202, str=1700, DU145=756, str=610
27108 tcgameth site:cg12788878, B=0.26, L=0.53, H=0.52
27108 tcgameth site:cg26107890, B=0.32, L=0.74, H=0.72
27108 tcgameth site:cg26125625, B=0.26, L=0.5, H=0.48
27108 tcgaexp gene=SLC12A8, entrez=84561, pos=chr3:124801480-124998091(-), B=668, L=1221, M=1227, H=1315