DMR 29893 chr8:49468251-49469100 (850bp)

DMR Stats
Positionchr8:49468251-49469100 (View on UCSC)
Width850bp
Genomic Contextintergenic
Nearest GenesEFCAB1 (154250bp away)
ANODEV p-value4.33801143155e-12
FrequenciesBenign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
29893 chr8 49466684 49468683 cpgShore — values(x.gr)[overs$srow, ]:46455
29893 chr8 49468960 49470959 cpgShore — values(x.gr)[overs$srow, ]:46456
29893 chr8 49467706 49468655 wgEncodeRegDnaseClusteredV2 63 score:1000, srow:1158857
29893 chr8 49468761 49469470 wgEncodeRegDnaseClusteredV2 67 score:490, srow:1158858
29893 chr8 49468733 49469096 wgEncodeRegTfbsClusteredV3 CTCF score:130, expCount:2, expNums:642,661, expScores:130,122, srow:3985958
29893 chr8 49468684 49468959 cpgIsland CpG: 35 length:276, cpgNum:35, gcNum:205, perCpg:25.4, perGc:74.3, obsExp:0.93, srow:25664
29893 chr8 49468917 49469316 wgEncodeRegTfbsClusteredV3 FOS score:254, expCount:1, expNums:457, expScores:254, srow:3985963
29893 chr8 49468766 49469189 wgEncodeRegTfbsClusteredV3 FOXP2 score:168, expCount:2, expNums:251,255, expScores:168,147, srow:3985959
29893 chr8 49468827 49469270 wgEncodeRegTfbsClusteredV3 GATA2 score:227, expCount:1, expNums:459, expScores:227, srow:3985962
29893 chr8 49468782 49469245 wgEncodeRegTfbsClusteredV3 POLR2A score:191, expCount:2, expNums:206,599, expScores:191,139, srow:3985960
29893 chr8 49468165 49468421 wgEncodeRegTfbsClusteredV3 RAD21 score:240, expCount:3, expNums:149,264,355, expScores:226,240,196, srow:3985957
29893 chr8 49468783 49469022 wgEncodeRegTfbsClusteredV3 USF1 score:135, expCount:1, expNums:265, expScores:135, srow:3985961
29893 chr8 49468952 49468970 tfbsConsSites V$AHRARNT_02 score:808, zScore:2.36, srow:5105226
29893 chr8 49468792 49468798 tfbsConsSites V$AP2REP_01 score:957, zScore:1.65, srow:5105218
29893 chr8 49468342 49468351 tfbsConsSites V$AP4_Q6 score:941, zScore:1.72, srow:5105204
29893 chr8 49468573 49468587 tfbsConsSites V$CDPCR3_01 score:822, zScore:2.42, srow:5105212
29893 chr8 49468497 49468510 tfbsConsSites V$CHX10_01 score:827, zScore:2.12, srow:5105211
29893 chr8 49469026 49469033 tfbsConsSites V$CREBP1_01 score:877, zScore:1.83, srow:5105230
29893 chr8 49469027 49469040 tfbsConsSites V$FOXO1_02 score:839, zScore:2.28, srow:5105231
29893 chr8 49469027 49469040 tfbsConsSites V$FOXO3_01 score:835, zScore:1.87, srow:5105232
29893 chr8 49469027 49469040 tfbsConsSites V$FOXO4_02 score:824, zScore:1.82, srow:5105233
29893 chr8 49469025 49469040 tfbsConsSites V$FREAC2_01 score:817, zScore:1.81, srow:5105228
29893 chr8 49468847 49468862 tfbsConsSites V$FREAC3_01 score:809, zScore:1.85, srow:5105223
29893 chr8 49469025 49469040 tfbsConsSites V$FREAC4_01 score:877, zScore:3.17, srow:5105229
29893 chr8 49469085 49469095 tfbsConsSites V$GATA_C score:906, zScore:2.09, srow:5105234
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Omics Overlaps

Dmrid Omic Set Data Plot
29893 cellmeth_recounts PrEC: 3, LNCaP: 396, DU145: 28
29893 cellmeth_diffreps_PrECvsLNCaP A=4, B=318, Length=1100, Event=Up, log2FC=6.31, padj=0
29893 cellmeth_diffreps_LNCaPvsDU145 A=35.28, B=0.94, Length=400, Event=Down, log2FC=-5.24, padj=4.08953502356965e-08
29893 cellmeth_diffreps_LNCaPvsDU145 A=304.68, B=18.71, Length=660, Event=Down, log2FC=-4.03, padj=0
29893 cellexp id=ENSG00000253608, name=RP11-770E5.1, PrEC=8, str=27, LNCaP=0, str=0, DU145=0, str=0
29893 cellexp id=ENSG00000253688, name=RP11-567J20.2, PrEC=1, str=0, LNCaP=0, str=0, DU145=0, str=0
29893 tcgameth site:cg04920358, B=0.07, L=0.47, H=0.4
29893 tcgameth site:cg10826197, B=0.03, L=0.33, H=0.38
29893 tcgameth site:cg14095438, B=0.16, L=0.56, H=0.51
29893 tcgameth site:cg14907769, B=0.18, L=0.62, H=0.57
29893 tcgameth site:cg18991611, B=0.07, L=0.59, H=0.54
29893 tcgameth site:cg19414967, B=0.33, L=0.67, H=0.66
29893 tcgameth site:cg20527270, B=0.1, L=0.67, H=0.56
29893 tcgameth site:cg27038634, B=0.27, L=0.55, H=0.55