DMR 30192 chr9:117501-118300 (800bp)

DMR Stats
Positionchr9:117501-118300 (View on UCSC)
Width800bp
Genomic Contextpromoter
Nearest GenesFOXD4 (0bp away)
ANODEV p-value1.52478218464e-05
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 5.0 (55.56 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
30192 FOXD4 29107 uc003zfz.4 chr9 116231 118417 - 800 100.0 0.06 0 47.88 E1 (100) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
30192 chr9 118178 120177 cpgShore — values(x.gr)[overs$srow, ]:47576
30192 chr9 117481 117815 wgEncodeRegDnaseClusteredV2 11 score:243, srow:1198079
30192 chr9 118001 118330 wgEncodeRegDnaseClusteredV2 6 score:115, srow:1198080
30192 chr9 117572 117572 cosmic COSM1104432 srow:1177960
30192 chr9 117572 117572 cosmic COSM1104433 srow:1177961
30192 chr9 117814 117814 cosmic COSM1104445 srow:1177974
30192 chr9 117814 117814 cosmic COSM1104446 srow:1177975
30192 chr9 117920 117920 cosmic COSM1104471 srow:1177980
30192 chr9 117920 117920 cosmic COSM1104472 srow:1177981
30192 chr9 117932 117932 cosmic COSM1104473 srow:1177982
30192 chr9 117932 117932 cosmic COSM1104474 srow:1177983
30192 chr9 118004 118005 cosmic COSM1104475 srow:1177988
30192 chr9 118004 118005 cosmic COSM1104476 srow:1177989
30192 chr9 118039 118039 cosmic COSM1104477 srow:1177992
30192 chr9 118039 118039 cosmic COSM1104478 srow:1177993
30192 chr9 118067 118067 cosmic COSM1104479 srow:1177998
30192 chr9 118067 118067 cosmic COSM1104480 srow:1177999
30192 chr9 118107 118107 cosmic COSM1104481 srow:1178003
30192 chr9 118107 118107 cosmic COSM1104482 srow:1178004
30192 chr9 117873 117873 cosmic COSM1285037 srow:1177976
30192 chr9 117873 117873 cosmic COSM1285038 srow:1177977
30192 chr9 117796 117796 cosmic COSM1285039 srow:1177972
30192 chr9 117796 117796 cosmic COSM1285040 srow:1177973
30192 chr9 117910 117910 cosmic COSM1314400 srow:1177978
30192 chr9 117910 117910 cosmic COSM1314401 srow:1177979
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  • 25 of 99 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
30192 cellmeth_recounts PrEC: 24, LNCaP: 193, DU145: 15
30192 cellmeth_diffreps_PrECvsLNCaP A=2, B=89, Length=760, Event=Up, log2FC=5.48, padj=0
30192 cellmeth_diffreps_PrECvsLNCaP A=24, B=56, Length=260, Event=Up, log2FC=1.22, padj=0.008870036705605
30192 cellmeth_diffreps_PrECvsDU145 A=25, B=4, Length=340, Event=Down, log2FC=-2.64, padj=0.00160404022456948
30192 cellmeth_diffreps_PrECvsDU145 A=28, B=3, Length=320, Event=Down, log2FC=-3.22, padj=8.63344400735211e-05
30192 cellmeth_diffreps_LNCaPvsDU145 A=192.43, B=12.16, Length=1280, Event=Down, log2FC=-3.98, padj=0
30192 cellexp id=ENSG00000170122, name=FOXD4, PrEC=3, str=21, LNCaP=465, str=274, DU145=47, str=57
30192 tcgameth site:cg18016181, B=0.24, L=0.58, H=0.59
30192 tcgameth site:cg25391162, B=0.5, L=0.64, H=0.64
30192 tcgaexp gene=FOXD4, entrez=2298, pos=chr9:116231-118417(-), B=18, L=37, M=34, H=39