DMR 32089 chr12:48577851-48578800 (950bp)

DMR Stats
Positionchr12:48577851-48578800 (View on UCSC)
Width950bp
Genomic Contextpromoter
Nearest GenesC12orf68 (0bp away)
ANODEV p-value7.4683764549e-10
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
32089 C12orf68 6343 uc001rrj.2 chr12 48577366 48579709 + 950 100.0 2.52 0 1.58 E1 (100) 9.58
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
32089 chr12 48578575 48580574 cpgShore — values(x.gr)[overs$srow, ]:9697
32089 chr12 48577921 48578875 wgEncodeRegDnaseClusteredV2 18 score:442, srow:268708
32089 chr12 48577706 48577895 wgEncodeRegDnaseClusteredV2 5 score:316, srow:268707
32089 chr12 48578155 48578155 cosmic COSM1361862 srow:277810
32089 chr12 48578436 48578436 cosmic COSM1606177 srow:277816
32089 chr12 48578409 48578410 cosmic COSM301350 srow:277815
32089 chr12 48577998 48577998 cosmic COSM40269 srow:277808
32089 chr12 48578200 48578200 cosmic COSM431174 srow:277811
32089 chr12 48578079 48578079 cosmic COSM459492 srow:277809
32089 chr12 48577967 48577967 cosmic COSM939800 srow:277807
32089 chr12 48578270 48578270 cosmic COSM939801 srow:277812
32089 chr12 48578326 48578326 cosmic COSM939802 srow:277813
32089 chr12 48578373 48578373 cosmic COSM939803 srow:277814
32089 chr12 48577362 48578574 cpgIsland CpG: 112 length:1213, cpgNum:112, gcNum:822, perCpg:18.5, perGc:67.8, obsExp:0.8, srow:5269
32089 chr12 48577196 48577851 wgEncodeRegTfbsClusteredV3 E2F1 score:407, expCount:1, expNums:572, expScores:407, srow:922338
32089 chr12 48577483 48579034 wgEncodeRegTfbsClusteredV3 EZH2 score:706, expCount:6, expNums:19,21,36,38,40,43, expScores:104,517,251,300,411,575, srow:922348
32089 chr12 48577198 48577867 wgEncodeRegTfbsClusteredV3 RBBP5 score:173, expCount:1, expNums:8, expScores:173, srow:922339
32089 chr12 48578113 48578922 wgEncodeRegTfbsClusteredV3 SUZ12 score:258, expCount:1, expNums:578, expScores:258, srow:922350
32089 chr12 48577985 48577991 tfbsConsSites V$AP2REP_01 score:968, zScore:1.83, srow:1141758
32089 chr12 48578065 48578073 tfbsConsSites V$AREB6_04 score:973, zScore:2.08, srow:1141769
32089 chr12 48577986 48578005 tfbsConsSites V$ARNT_02 score:842, zScore:2.75, srow:1141760
32089 chr12 48578475 48578489 tfbsConsSites V$CDPCR3_01 score:794, zScore:1.82, srow:1141788
32089 chr12 48577887 48577910 tfbsConsSites V$COMP1_01 score:784, zScore:1.66, srow:1141753
32089 chr12 48578061 48578084 tfbsConsSites V$COMP1_01 score:798, zScore:1.96, srow:1141768
32089 chr12 48578183 48578196 tfbsConsSites V$COUP_01 score:851, zScore:1.81, srow:1141773
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  • 25 of 86 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
32089 cellmeth_recounts PrEC: 5, LNCaP: 67, DU145: 41
32089 cellmeth_diffreps_PrECvsLNCaP A=4, B=39, Length=380, Event=Up, log2FC=3.29, padj=6.0485972066321e-07
32089 cellmeth_diffreps_PrECvsDU145 A=0, B=11, Length=200, Event=Up, log2FC=Inf, padj=0.00313959514768542
32089 cellexp id=ENSG00000177875, name=C12orf68, PrEC=9, str=18, LNCaP=4, str=4, DU145=58, str=20
32089 tcgameth site:cg07454491, B=0.1, L=0.25, H=0.22
32089 tcgameth site:cg10216353, B=0.08, L=0.24, H=0.17
32089 tcgameth site:cg14793287, B=0.4, L=0.6, H=0.59
32089 tcgameth site:cg15959252, B=0.57, L=0.82, H=0.78
32089 tcgameth site:cg20954987, B=0.22, L=0.44, H=0.43
32089 tcgaexp gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512
32089 tcgaexp gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045
32089 tcgaexp gene=C12orf68, entrez=387856, pos=chr12:48577366-48579709(+), B=83, L=63, M=80, H=68