DMR 32158 chr12:54366651-54366900 (250bp)

DMR Stats
Positionchr12:54366651-54366900 (View on UCSC)
Width250bp
Genomic Contextpromoter
Nearest GenesHOTAIR (0bp away)
ANODEV p-value9.56345605882e-10
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
32158 HOTAIR 6506 uc031qho.1 chr12 54356092 54368740 - 250 100.0 0.09 1 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
32158 chr12 54364816 54366815 cpgShore — values(x.gr)[overs$srow, ]:9977
32158 chr12 54366801 54368315 wgEncodeRegDnaseClusteredV2 59 score:1000, srow:273104
32158 chr12 54366799 54367314 wgEncodeRegTfbsClusteredV3 CTCF score:215, expCount:3, expNums:9,39,612, expScores:215,124,117, srow:942034
32158 chr12 54366816 54369103 cpgIsland CpG: 165 length:2288, cpgNum:165, gcNum:1350, perCpg:14.4, perGc:59, obsExp:0.83, srow:5420
32158 chr12 54366221 54369895 wgEncodeRegTfbsClusteredV3 EZH2 score:928, expCount:4, expNums:6,15,21,43, expScores:460,254,485,290, srow:942026
32158 chr12 54366819 54367274 wgEncodeRegTfbsClusteredV3 GTF2F1 score:132, expCount:1, expNums:389, expScores:132, srow:942035
32158 chr12 54366730 54367125 wgEncodeRegTfbsClusteredV3 MAX score:281, expCount:1, expNums:395, expScores:281, srow:942030
32158 chr12 54366548 54367219 wgEncodeRegTfbsClusteredV3 POLR2A score:256, expCount:3, expNums:249,256,637, expScores:154,147,256, srow:942028
32158 chr12 54366615 54367362 wgEncodeRegTfbsClusteredV3 SMARCC2 score:237, expCount:1, expNums:372, expScores:231, srow:942029
32158 chr12 54366793 54366976 wgEncodeRegTfbsClusteredV3 TBP score:665, expCount:1, expNums:412, expScores:665, srow:942033
32158 chr12 54366759 54367028 wgEncodeRegTfbsClusteredV3 USF1 score:361, expCount:2, expNums:161,265, expScores:361,137, srow:942031
32158 chr12 54366759 54367034 wgEncodeRegTfbsClusteredV3 USF2 score:1000, expCount:2, expNums:360,417, expScores:152,1000, srow:942032
32158 chr12 54366900 54366915 tfbsConsSites V$AHRARNT_01 score:845, zScore:1.97, srow:1160538
32158 chr12 54366773 54366782 tfbsConsSites V$CDPCR1_01 score:858, zScore:2.1, srow:1160526
32158 chr12 54366809 54366818 tfbsConsSites V$CDPCR1_01 score:850, zScore:1.95, srow:1160530
32158 chr12 54366722 54366734 tfbsConsSites V$CEBP_01 score:900, zScore:1.76, srow:1160522
32158 chr12 54366655 54366672 tfbsConsSites V$CMYB_01 score:798, zScore:1.84, srow:1160506
32158 chr12 54366835 54366842 tfbsConsSites V$CREBP1_01 score:877, zScore:1.83, srow:1160535
32158 chr12 54366833 54366844 tfbsConsSites V$E4BP4_01 score:823, zScore:1.71, srow:1160534
32158 chr12 54366662 54366673 tfbsConsSites V$EGR1_01 score:864, zScore:2.26, srow:1160508
32158 chr12 54366680 54366691 tfbsConsSites V$EGR1_01 score:864, zScore:2.26, srow:1160514
32158 chr12 54366852 54366863 tfbsConsSites V$EGR1_01 score:838, zScore:1.83, srow:1160536
32158 chr12 54366662 54366673 tfbsConsSites V$EGR2_01 score:859, zScore:2.18, srow:1160509
32158 chr12 54366680 54366691 tfbsConsSites V$EGR2_01 score:871, zScore:2.37, srow:1160515
32158 chr12 54366662 54366673 tfbsConsSites V$EGR3_01 score:857, zScore:2.22, srow:1160510
  • Page 1 of 2
  • 25 of 49 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
32158 cellmeth_recounts PrEC: 2, LNCaP: 47, DU145: 24
32158 cellmeth_diffreps_PrECvsLNCaP A=8, B=154, Length=1100, Event=Up, log2FC=4.27, padj=0
32158 cellmeth_diffreps_PrECvsDU145 A=1, B=18, Length=220, Event=Up, log2FC=4.17, padj=0.000790397688779211
32158 cellmeth_diffreps_LNCaPvsDU145 A=26.73, B=4.68, Length=200, Event=Down, log2FC=-2.51, padj=0.00406435538294931
32158 cellexp id=ENSG00000228630, name=HOTAIR, PrEC=0, str=23, LNCaP=3, str=1, DU145=104, str=48
32158 tcgameth site:cg03132556, B=0.25, L=0.59, H=0.59
32158 tcgameth site:cg06630413, B=0.3, L=0.54, H=0.57
32158 tcgameth site:cg08962452, B=0.27, L=0.51, H=0.5
32158 tcgameth site:cg26386624, B=0.32, L=0.54, H=0.56
32158 tcgaexp gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512
32158 tcgaexp gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045
32158 tcgaexp gene=HOTAIR, entrez=100124700, pos=chr12:54356092-54368740(-), B=14, L=6, M=9, H=13