DMR 32899 chr14:73958951-73959300 (350bp)
| DMR Stats | |
|---|---|
| Position | chr14:73958951-73959300 (View on UCSC) |
| Width | 350bp |
| Genomic Context | 3' end |
| Nearest Genes | C14orf169, HEATR4 (0bp away) |
| ANODEV p-value | 1.82180519517e-08 |
| Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32899 | C14orf169 | 8427 | uc001xok.1 | chr14 | 73957644 | 73960105 | + | 350 | 100.0 | 11.33 | 0 | 0.0 | E1 (0), I1 (0), E2 (100) | 55.71 |
| 32899 | HEATR4 | 8426 | uc021rwe.1 | chr14 | 73945189 | 74025651 | - | 350 | 100.0 | 9.26 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (100), E18 (0) | 0.0 |
| 32899 | HEATR4 | 8426 | uc021rwf.2 | chr14 | 73945189 | 74025651 | - | 350 | 100.0 | 18.52 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (100), E17 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 32899 | chr14 | 73958890 | 73960889 | cpgShore | — | values(x.gr)[overs$srow, ]:13171 |
| 32899 | chr14 | 73958921 | 73959375 | wgEncodeRegDnaseClusteredV2 | 8 | score:342, srow:364724 |
| 32899 | chr14 | 73959242 | 73959257 | tfbsConsSites | V$ARP1_01 | score:816, zScore:2.22, srow:1599068 |
| 32899 | chr14 | 73959292 | 73959307 | tfbsConsSites | V$ELK1_01 | score:839, zScore:1.69, srow:1599069 |
| 32899 | chr14 | 73959163 | 73959176 | tfbsConsSites | V$FAC1_01 | score:836, zScore:1.7, srow:1599066 |
| 32899 | chr14 | 73959297 | 73959313 | tfbsConsSites | V$LUN1_01 | score:705, zScore:1.69, srow:1599070 |
| 32899 | chr14 | 73958942 | 73958955 | tfbsConsSites | V$OCT1_06 | score:890, zScore:2.24, srow:1599064 |
| 32899 | chr14 | 73959234 | 73959254 | tfbsConsSites | V$PAX6_01 | score:796, zScore:2.54, srow:1599067 |
| 32899 | chr14 | 73958945 | 73958961 | tfbsConsSites | V$YY1_01 | score:870, zScore:1.87, srow:1599065 |
| 32899 | chr14 | 73958967 | 73958977 | phastConsElements100way | lod=100 | score:449, srow:2781587 |
| 32899 | chr14 | 73959111 | 73959121 | phastConsElements100way | lod=101 | score:450, srow:2781600 |
| 32899 | chr14 | 73959243 | 73959253 | phastConsElements100way | lod=114 | score:462, srow:2781610 |
| 32899 | chr14 | 73959009 | 73959022 | phastConsElements100way | lod=116 | score:464, srow:2781590 |
| 32899 | chr14 | 73959051 | 73959061 | phastConsElements100way | lod=116 | score:464, srow:2781595 |
| 32899 | chr14 | 73959147 | 73959148 | phastConsElements100way | lod=12 | score:240, srow:2781605 |
| 32899 | chr14 | 73959292 | 73959292 | phastConsElements100way | lod=12 | score:240, srow:2781616 |
| 32899 | chr14 | 73959150 | 73959169 | phastConsElements100way | lod=132 | score:477, srow:2781606 |
| 32899 | chr14 | 73959172 | 73959196 | phastConsElements100way | lod=149 | score:489, srow:2781607 |
| 32899 | chr14 | 73959267 | 73959268 | phastConsElements100way | lod=15 | score:262, srow:2781613 |
| 32899 | chr14 | 73958958 | 73958958 | phastConsElements100way | lod=17 | score:274, srow:2781585 |
| 32899 | chr14 | 73958988 | 73959007 | phastConsElements100way | lod=228 | score:531, srow:2781589 |
| 32899 | chr14 | 73959073 | 73959073 | phastConsElements100way | lod=23 | score:304, srow:2781597 |
| 32899 | chr14 | 73959084 | 73959109 | phastConsElements100way | lod=269 | score:547, srow:2781599 |
| 32899 | chr14 | 73959138 | 73959139 | phastConsElements100way | lod=27 | score:320, srow:2781603 |
| 32899 | chr14 | 73959255 | 73959256 | phastConsElements100way | lod=28 | score:323, srow:2781611 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 32899 | cellmeth_recounts | PrEC: 28, LNCaP: 202, DU145: 12 |  |
| 32899 | cellmeth_diffreps_PrECvsLNCaP | A=51, B=4784, Length=2580, Event=Up, log2FC=6.55, padj=0 |  |
| 32899 | cellmeth_diffreps_PrECvsDU145 | A=42, B=8, Length=360, Event=Down, log2FC=-2.39, padj=3.26137154746126e-05 |  |
| 32899 | cellmeth_diffreps_LNCaPvsDU145 | A=5114.31, B=28.06, Length=2520, Event=Down, log2FC=-7.51, padj=0 |  |
| 32899 | cellexp | id=ENSG00000170468, name=AC005280.1, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 32899 | cellexp | id=ENSG00000187105, name=HEATR4, PrEC=9, str=34, LNCaP=1, str=0, DU145=43, str=32 |  |
| 32899 | cellexp | id=ENSG00000255242, name=C14orf169, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 32899 | tcgaexp | gene=HEATR4, entrez=399671, pos=chr14:73945189-74025651(-), B=15, L=10, M=12, H=14 |  |