DMR 33392 chr15:90039351-90039950 (600bp)
| DMR Stats | |
|---|---|
| Position | chr15:90039351-90039950 (View on UCSC) |
| Width | 600bp |
| Genomic Context | promoter |
| Nearest Genes | RHCG (0bp away) |
| ANODEV p-value | 4.89087018982e-09 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33392 | RHCG | 10253 | uc002bnz.2 | chr15 | 90014638 | 90039799 | - | 449 | 74.83 | 1.9 | 0 | 100.0 | E1 (34.67), I1 (40.17), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 33392 | RHCG | 10253 | uc002boa.2 | chr15 | 90014638 | 90039799 | - | 449 | 74.83 | 1.42 | 1 | 100.0 | E1 (34.67), I1 (40.17), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 33392 | RHCG | 10253 | uc010bnq.1 | chr15 | 90020959 | 90039799 | - | 449 | 74.83 | 1.84 | 0 | 100.0 | E1 (34.67), I1 (40.17), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 33392 | chr15 | 90037465 | 90039464 | cpgShore | — | values(x.gr)[overs$srow, ]:15193 |
| 33392 | chr15 | 90039806 | 90040275 | wgEncodeRegDnaseClusteredV2 | 25 | score:522, srow:420142 |
| 33392 | chr15 | 90039466 | 90039755 | wgEncodeRegDnaseClusteredV2 | 73 | score:779, srow:420141 |
| 33392 | chr15 | 90039356 | 90039935 | wgEncodeRegTfbsClusteredV3 | ATF2 | score:262, expCount:1, expNums:134, expScores:262, srow:1419547 |
| 33392 | chr15 | 90039668 | 90039668 | cosmic | COSM121744 | srow:415009 |
| 33392 | chr15 | 90039673 | 90039673 | cosmic | COSM1264148 | srow:415010 |
| 33392 | chr15 | 90039676 | 90039676 | cosmic | COSM1375340 | srow:415011 |
| 33392 | chr15 | 90039688 | 90039688 | cosmic | COSM1375341 | srow:415012 |
| 33392 | chr15 | 90039774 | 90039774 | cosmic | COSM1608805 | srow:415013 |
| 33392 | chr15 | 90039635 | 90039635 | cosmic | COSM966324 | srow:415008 |
| 33392 | chr15 | 90039566 | 90039845 | wgEncodeRegTfbsClusteredV3 | CREB1 | score:144, expCount:1, expNums:47, expScores:144, srow:1419560 |
| 33392 | chr15 | 90039346 | 90039945 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:146, expCount:1, expNums:348, expScores:146, srow:1419546 |
| 33392 | chr15 | 90039398 | 90039833 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:85, expNums:2,5,12,16,18,20,24,37,39,42,44,48,49,137,174,213,267,290,463,493,595,597,601,603,604,605,606,607,609,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,648,650,651,652,653,654,655,656,657,658,659,660,661,662,664,665,667,668,669,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687, expScores:184,1000,555,221,238,274,679,181,381,186,313,956,958,1000,1000,1000,698,535,191,985,1000,133,390,591,400,773,224,175,555,165,212,578,1000,1000,1000,1000,1000,541,312,861,217,196,121,319,163,240,920,369,682,121,288,316,337,483,202,217,270,139,272,835,212,825,1000,637,123,539,149,352,198,275,696,443,338,819,528,206,467,1000,116,293,298,101,564,890,319, srow:1419549 |
| 33392 | chr15 | 90039504 | 90039673 | wgEncodeRegTfbsClusteredV3 | CTCFL | score:104, expCount:1, expNums:214, expScores:104, srow:1419554 |
| 33392 | chr15 | 90039465 | 90039984 | cpgIsland | CpG: 50 | length:520, cpgNum:50, gcNum:359, perCpg:19.2, perGc:69, obsExp:0.81, srow:8256 |
| 33392 | chr15 | 90039268 | 90040376 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:544, expCount:4, expNums:21,36,38,43, expScores:429,222,348,529, srow:1419545 |
| 33392 | chr15 | 90039649 | 90040046 | wgEncodeRegTfbsClusteredV3 | MAX | score:509, expCount:2, expNums:278,511, expScores:509,146, srow:1419563 |
| 33392 | chr15 | 90039492 | 90040034 | wgEncodeRegTfbsClusteredV3 | MYC | score:364, expCount:2, expNums:624,626, expScores:303,364, srow:1419553 |
| 33392 | chr15 | 90039532 | 90039942 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:5, expNums:61,62,146,596,632, expScores:1000,631,255,358,651, srow:1419557 |
| 33392 | chr15 | 90039478 | 90039747 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:699, expCount:6, expNums:149,193,231,280,355,448, expScores:699,429,235,315,480,188, srow:1419551 |
| 33392 | chr15 | 90039548 | 90040067 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:195, expCount:1, expNums:357, expScores:195, srow:1419558 |
| 33392 | chr15 | 90039509 | 90039778 | wgEncodeRegTfbsClusteredV3 | SMC3 | score:139, expCount:1, expNums:450, expScores:139, srow:1419555 |
| 33392 | chr15 | 90039487 | 90040096 | wgEncodeRegTfbsClusteredV3 | SP4 | score:224, expCount:1, expNums:155, expScores:224, srow:1419552 |
| 33392 | chr15 | 90039584 | 90039833 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:487, expCount:1, expNums:157, expScores:487, srow:1419562 |
| 33392 | chr15 | 90039568 | 90039923 | wgEncodeRegTfbsClusteredV3 | TAF7 | score:248, expCount:1, expNums:158, expScores:248, srow:1419561 |
- Page 1 of 3
- Next
- 25 of 65 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 33392 | cellmeth_recounts | PrEC: 5, LNCaP: 98, DU145: 1 |  |
| 33392 | cellmeth_diffreps_PrECvsLNCaP | A=7, B=76, Length=640, Event=Up, log2FC=3.44, padj=2.67853354721823e-14 |  |
| 33392 | cellmeth_diffreps_LNCaPvsDU145 | A=83.39, B=0.94, Length=680, Event=Down, log2FC=-6.48, padj=0 |  |
| 33392 | cellexp | id=ENSG00000140519, name=RHCG, PrEC=2684, str=4951, LNCaP=2, str=5, DU145=65, str=79 |  |
| 33392 | tcgameth | site:cg02805106, B=0.25, L=0.48, H=0.46 |  |
| 33392 | tcgameth | site:cg10453365, B=0.33, L=0.62, H=0.6 |  |
| 33392 | tcgameth | site:cg12042113, B=0.23, L=0.56, H=0.54 |  |
| 33392 | tcgameth | site:cg18726691, B=0.23, L=0.67, H=0.63 |  |
| 33392 | tcgameth | site:cg24653181, B=0.26, L=0.57, H=0.56 |  |
| 33392 | tcgaexp | gene=RHCG, entrez=51458, pos=chr15:90014638-90039799(-), B=271, L=58, M=75, H=40 |  |