DMR 34060 chr17:17626301-17628750 (2450bp)
| DMR Stats | |
|---|---|
| Position | chr17:17626301-17628750 (View on UCSC) |
| Width | 2450bp |
| Genomic Context | exon |
| Nearest Genes | RAI1 (0bp away) |
| ANODEV p-value | 7.14529637478e-09 |
| Frequencies | Benign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34060 | RAI1 | 12265 | uc002grm.3 | chr17 | 17584787 | 17714765 | + | 2450 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (42.49), E2 (5.39), I2 (52.16), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 34060 | chr17 | 17628501 | 17630500 | cpgShore | — | values(x.gr)[overs$srow, ]:18679 |
| 34060 | chr17 | 17626246 | 17627055 | wgEncodeRegDnaseClusteredV2 | 101 | score:1000, srow:482450 |
| 34060 | chr17 | 17627066 | 17628835 | wgEncodeRegDnaseClusteredV2 | 104 | score:1000, srow:482451 |
| 34060 | chr17 | 17627061 | 17627384 | wgEncodeRegTfbsClusteredV3 | BACH1 | score:196, expCount:1, expNums:341, expScores:196, srow:1645143 |
| 34060 | chr17 | 17626341 | 17626696 | wgEncodeRegTfbsClusteredV3 | BCL3 | score:233, expCount:1, expNums:83, expScores:233, srow:1645138 |
| 34060 | chr17 | 17627623 | 17628238 | wgEncodeRegTfbsClusteredV3 | CHD1 | score:244, expCount:1, expNums:4, expScores:244, srow:1645150 |
| 34060 | chr17 | 17627621 | 17628220 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:244, expCount:1, expNums:348, expScores:244, srow:1645149 |
| 34060 | chr17 | 17625606 | 17628500 | cpgIsland | CpG: 230 | length:2895, cpgNum:230, gcNum:1766, perCpg:15.9, perGc:61, obsExp:0.86, srow:10236 |
| 34060 | chr17 | 17627899 | 17628130 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:1000, expCount:2, expNums:86,292, expScores:1000,1000, srow:1645155 |
| 34060 | chr17 | 17627972 | 17628247 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:652, expCount:2, expNums:87,138, expScores:652,215, srow:1645157 |
| 34060 | chr17 | 17628017 | 17628224 | wgEncodeRegTfbsClusteredV3 | ELF1 | score:369, expCount:1, expNums:88, expScores:369, srow:1645158 |
| 34060 | chr17 | 17625428 | 17626385 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:1000, expCount:1, expNums:6, expScores:789, srow:1645129 |
| 34060 | chr17 | 17627934 | 17628237 | wgEncodeRegTfbsClusteredV3 | FOXP2 | score:153, expCount:1, expNums:251, expScores:153, srow:1645156 |
| 34060 | chr17 | 17628507 | 17628810 | wgEncodeRegTfbsClusteredV3 | FOXP2 | score:173, expCount:1, expNums:251, expScores:173, srow:1645160 |
| 34060 | chr17 | 17627840 | 17628275 | wgEncodeRegTfbsClusteredV3 | MAZ | score:182, expCount:1, expNums:297, expScores:182, srow:1645153 |
| 34060 | chr17 | 17627226 | 17627661 | wgEncodeRegTfbsClusteredV3 | MXI1 | score:190, expCount:1, expNums:298, expScores:190, srow:1645145 |
| 34060 | chr17 | 17627890 | 17628199 | wgEncodeRegTfbsClusteredV3 | MYC | score:244, expCount:1, expNums:624, expScores:244, srow:1645154 |
| 34060 | chr17 | 17628568 | 17628757 | wgEncodeRegTfbsClusteredV3 | MYC | score:108, expCount:1, expNums:617, expScores:108, srow:1645161 |
| 34060 | chr17 | 17627536 | 17628219 | wgEncodeRegTfbsClusteredV3 | PML | score:282, expCount:1, expNums:103, expScores:282, srow:1645148 |
| 34060 | chr17 | 17626630 | 17626999 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:224, expCount:1, expNums:634, expScores:224, srow:1645141 |
| 34060 | chr17 | 17627110 | 17627504 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:357, expCount:1, expNums:105, expScores:357, srow:1645144 |
| 34060 | chr17 | 17627746 | 17628299 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:7, expNums:206,330,334,336,461,632,633, expScores:189,152,160,358,156,1000,383, srow:1645152 |
| 34060 | chr17 | 17628416 | 17628920 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:501, expCount:4, expNums:206,461,632,633, expScores:148,225,501,255, srow:1645159 |
| 34060 | chr17 | 17627482 | 17627791 | wgEncodeRegTfbsClusteredV3 | POU2F2 | score:209, expCount:1, expNums:125, expScores:209, srow:1645147 |
| 34060 | chr17 | 17627479 | 17628074 | wgEncodeRegTfbsClusteredV3 | RELA | score:233, expCount:6, expNums:282,300,325,327,329,331, expScores:221,183,205,131,198,233, srow:1645146 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 34060 | cellmeth_recounts | PrEC: 80, LNCaP: 4849, DU145: 61 |  |
| 34060 | cellmeth_diffreps_PrECvsLNCaP | A=583, B=5143, Length=3860, Event=Up, log2FC=3.14, padj=0 |  |
| 34060 | cellmeth_diffreps_PrECvsDU145 | A=550, B=23, Length=1340, Event=Down, log2FC=-4.58, padj=0 |  |
| 34060 | cellmeth_diffreps_LNCaPvsDU145 | A=5498.1, B=59.87, Length=3880, Event=Down, log2FC=-6.52, padj=0 |  |
| 34060 | cellexp | id=ENSG00000108557, name=RAI1, PrEC=8222, str=4496, LNCaP=5636, str=3754, DU145=1644, str=1097 |  |
| 34060 | tcgameth | site:cg00073010, B=0.15, L=0.59, H=0.54 |  |
| 34060 | tcgameth | site:cg13000649, B=0.12, L=0.54, H=0.48 |  |
| 34060 | tcgameth | site:cg19447962, B=0.35, L=0.78, H=0.71 |  |
| 34060 | tcgaexp | gene=CRHR1, entrez=1394, pos=chr17:954315-43913194(+), B=36, L=21, M=25, H=18 |  |
| 34060 | tcgaexp | gene=MAPT, entrez=4137, pos=chr17:762281-44105699(+), B=1933, L=2382, M=2487, H=2583 |  |
| 34060 | tcgaexp | gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700 |  |
| 34060 | tcgaexp | gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418 |  |
| 34060 | tcgaexp | gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940 |  |
| 34060 | tcgaexp | gene=RAI1, entrez=10743, pos=chr17:17584787-17714765(+), B=3085, L=2862, M=2789, H=2953 |  |
| 34060 | tcgaexp | gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230 |  |
| 34060 | tcgaexp | gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450 |  |
| 34060 | tcgaexp | gene=CRHR1-IT1, entrez=147081, pos=chr17:1143726-43723595(+), B=197, L=211, M=215, H=223 |  |
| 34060 | tcgaexp | gene=SPPL2C, entrez=162540, pos=chr17:943102-43924438(+), B=0, L=0, M=0, H=0 |  |
| 34060 | tcgaexp | gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486 |  |
| 34060 | tcgaexp | gene=STH, entrez=246744, pos=chr17:790689-44077060(+), B=0, L=0, M=0, H=0 |  |
| 34060 | tcgaexp | gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017 |  |
| 34060 | tcgaexp | gene=MGC57346, entrez=401884, pos=chr17:1151952-43715329(+), B=601, L=581, M=566, H=598 |  |
| 34060 | tcgaexp | gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377 |  |
| 34060 | tcgaexp | gene=LOC644172, entrez=644172, pos=chr17:1188439-43679748(-), B=84, L=82, M=93, H=90 |  |
| 34060 | tcgaexp | gene=MAPT-AS1, entrez=100128977, pos=chr17:894694-43972879(-), B=1, L=2, M=4, H=2 |  |
| 34060 | tcgaexp | gene=MAPT-IT1, entrez=100130148, pos=chr17:891434-43976164(+), B=5, L=3, M=3, H=4 |  |