DMR 35033 chr19:17403001-17403500 (500bp)

DMR Stats
Positionchr19:17403001-17403500 (View on UCSC)
Width500bp
Genomic Context3' end
Nearest GenesABHD8 (0bp away)
ANODEV p-value0.0111119314747
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
35033 ABHD8 14693 uc002ngb.4 chr19 17402940 17414282 - 500 100.0 0.12 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (100) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
35033 chr19 17401040 17403039 cpgShore — values(x.gr)[overs$srow, ]:23823
35033 chr19 17402721 17403175 wgEncodeRegDnaseClusteredV2 17 score:449, srow:569053
35033 chr19 17403186 17403470 wgEncodeRegDnaseClusteredV2 84 score:1000, srow:569054
35033 chr19 17403373 17404011 wgEncodeRegTfbsClusteredV3 CBX3 score:292, expCount:1, expNums:211, expScores:282, srow:1979478
35033 chr19 17403141 17403596 wgEncodeRegTfbsClusteredV3 CCNT2 score:177, expCount:1, expNums:476, expScores:177, srow:1979460
35033 chr19 17403340 17403709 wgEncodeRegTfbsClusteredV3 CHD2 score:139, expCount:1, expNums:380, expScores:139, srow:1979476
35033 chr19 17403040 17403570 cpgIsland CpG: 47 length:531, cpgNum:47, gcNum:373, perCpg:17.7, perGc:70.2, obsExp:0.73, srow:13203
35033 chr19 17403199 17403467 wgEncodeRegTfbsClusteredV3 EGR1 score:269, expCount:2, expNums:87,216, expScores:166,269, srow:1979463
35033 chr19 17403180 17403331 wgEncodeRegTfbsClusteredV3 ELF1 score:294, expCount:2, expNums:88,217, expScores:189,294, srow:1979461
35033 chr19 17403259 17403648 wgEncodeRegTfbsClusteredV3 ETS1 score:153, expCount:1, expNums:218, expScores:153, srow:1979469
35033 chr19 17403214 17403517 wgEncodeRegTfbsClusteredV3 FOXP2 score:286, expCount:1, expNums:251, expScores:286, srow:1979466
35033 chr19 17403097 17403406 wgEncodeRegTfbsClusteredV3 GABPA score:125, expCount:1, expNums:220, expScores:125, srow:1979458
35033 chr19 17403396 17403759 wgEncodeRegTfbsClusteredV3 GTF2F1 score:143, expCount:1, expNums:349, expScores:143, srow:1979481
35033 chr19 17403349 17403872 wgEncodeRegTfbsClusteredV3 HDAC1 score:171, expCount:1, expNums:26, expScores:171, srow:1979477
35033 chr19 17402736 17403085 wgEncodeRegTfbsClusteredV3 HDAC2 score:152, expCount:1, expNums:27, expScores:152, srow:1979452
35033 chr19 17403092 17403587 wgEncodeRegTfbsClusteredV3 HMGN3 score:224, expCount:1, expNums:501, expScores:224, srow:1979457
35033 chr19 17403186 17403545 wgEncodeRegTfbsClusteredV3 IRF1 score:345, expCount:1, expNums:506, expScores:345, srow:1979462
35033 chr19 17403471 17403774 wgEncodeRegTfbsClusteredV3 KDM5A score:113, expCount:1, expNums:7, expScores:113, srow:1979487
35033 chr19 17403141 17403916 wgEncodeRegTfbsClusteredV3 KDM5B score:323, expCount:1, expNums:31, expScores:202, srow:1979459
35033 chr19 17403214 17403976 wgEncodeRegTfbsClusteredV3 MAX score:808, expCount:7, expNums:223,278,296,352,395,511,576, expScores:808,243,231,175,504,350,242, srow:1979465
35033 chr19 17403438 17403925 wgEncodeRegTfbsClusteredV3 MAZ score:417, expCount:2, expNums:396,512, expScores:247,417, srow:1979484
35033 chr19 17403460 17403950 wgEncodeRegTfbsClusteredV3 MXI1 score:335, expCount:4, expNums:298,353,397,513, expScores:335,194,190,145, srow:1979486
35033 chr19 17403395 17403994 wgEncodeRegTfbsClusteredV3 MYC score:813, expCount:16, expNums:347,382,485,486,487,488,489,490,560,561,575,600,617,620,623,626, expScores:248,233,168,217,648,261,813,250,312,261,455,125,114,201,242,433, srow:1979480
35033 chr19 17403279 17403545 wgEncodeRegTfbsClusteredV3 NRF1 score:244, expCount:3, expNums:303,354,518, expScores:179,244,120, srow:1979471
35033 chr19 17403301 17403754 wgEncodeRegTfbsClusteredV3 PHF8 score:1000, expCount:1, expNums:30, expScores:1000, srow:1979473
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  • 25 of 52 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
35033 cellmeth_recounts PrEC: 127, LNCaP: 48, DU145: 12
35033 cellmeth_diffreps_PrECvsLNCaP A=223, B=43, Length=940, Event=Down, log2FC=-2.37, padj=0
35033 cellmeth_diffreps_PrECvsDU145 A=223, B=14, Length=1000, Event=Down, log2FC=-3.99, padj=0
35033 cellmeth_diffreps_LNCaPvsDU145 A=23.52, B=3.74, Length=200, Event=Down, log2FC=-2.65, padj=0.00630962522793068
35033 cellexp id=ENSG00000127220, name=ABHD8, PrEC=711, str=407, LNCaP=1584, str=902, DU145=1534, str=752
35033 cellexp id=ENSG00000130312, name=MRPL34, PrEC=2286, str=1036, LNCaP=3153, str=2855, DU145=1352, str=1180
35033 tcgameth site:cg12247222, B=0.45, L=0.53, H=0.54
35033 tcgameth site:cg18888655, B=0.55, L=0.58, H=0.61
35033 tcgaexp gene=ABHD8, entrez=79575, pos=chr19:17402940-17414282(-), B=1000, L=927, M=824, H=711