DMR 36516 chr1:2165851-2166050 (200bp)

DMR Stats
Positionchr1:2165851-2166050 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesSKI (0bp away)
ANODEV p-value0.000505516091291
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 1.0 (11.11 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
36516 SKI 98 uc001aja.4 chr1 2160134 2241652 + 200 100.0 0.15 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
36516 chr1 2165841 2166215 wgEncodeRegDnaseClusteredV2 101 score:1000, srow:1350
36516 chr1 2166005 2166307 wgEncodeRegTfbsClusteredV3 CEBPB score:1000, expCount:8, expNums:172,212,277,378,425,426,462,477, expScores:1000,1000,1000,1000,1000,1000,1000,1000, srow:6869
36516 chr1 2165992 2166267 wgEncodeRegTfbsClusteredV3 CEBPD score:282, expCount:1, expNums:173, expScores:282, srow:6867
36516 chr1 2165599 2165875 wgEncodeRegTfbsClusteredV3 CTCF score:166, expCount:2, expNums:604,667, expScores:166,149, srow:6840
36516 chr1 2165941 2166216 wgEncodeRegTfbsClusteredV3 ELF1 score:254, expCount:1, expNums:175, expScores:254, srow:6855
36516 chr1 2165949 2166338 wgEncodeRegTfbsClusteredV3 EP300 score:888, expCount:3, expNums:190,401,443, expScores:888,575,322, srow:6858
36516 chr1 2166000 2166285 wgEncodeRegTfbsClusteredV3 FOS score:293, expCount:2, expNums:557,559, expScores:293,195, srow:6868
36516 chr1 2165984 2166275 wgEncodeRegTfbsClusteredV3 FOXA1 score:211, expCount:2, expNums:177,178, expScores:156,211, srow:6866
36516 chr1 2165957 2166412 wgEncodeRegTfbsClusteredV3 GTF2F1 score:186, expCount:1, expNums:389, expScores:186, srow:6860
36516 chr1 2165950 2166289 wgEncodeRegTfbsClusteredV3 HDAC2 score:227, expCount:1, expNums:181, expScores:227, srow:6859
36516 chr1 2165977 2166266 wgEncodeRegTfbsClusteredV3 HNF4G score:213, expCount:1, expNums:183, expScores:213, srow:6864
36516 chr1 2166030 2166369 wgEncodeRegTfbsClusteredV3 JUN score:118, expCount:1, expNums:381, expScores:118, srow:6872
36516 chr1 2166025 2166344 wgEncodeRegTfbsClusteredV3 JUND score:171, expCount:1, expNums:393, expScores:171, srow:6870
36516 chr1 2165736 2166579 wgEncodeRegTfbsClusteredV3 MAX score:322, expCount:4, expNums:296,395,439,576, expScores:179,322,182,197, srow:6844
36516 chr1 2165711 2166146 wgEncodeRegTfbsClusteredV3 MAZ score:170, expCount:1, expNums:297, expScores:170, srow:6843
36516 chr1 2165907 2166334 wgEncodeRegTfbsClusteredV3 MXI1 score:361, expCount:2, expNums:397,441, expScores:177,361, srow:6852
36516 chr1 2166026 2166324 wgEncodeRegTfbsClusteredV3 MYBL2 score:434, expCount:1, expNums:186, expScores:434, srow:6871
36516 chr1 2165919 2166295 wgEncodeRegTfbsClusteredV3 MYC score:527, expCount:3, expNums:560,561,575, expScores:527,279,370, srow:6854
36516 chr1 2165881 2166424 wgEncodeRegTfbsClusteredV3 NFIC score:281, expCount:1, expNums:187, expScores:281, srow:6851
36516 chr1 2165841 2166320 wgEncodeRegTfbsClusteredV3 POLR2A score:175, expCount:2, expNums:338,445, expScores:175,135, srow:6848
36516 chr1 2165917 2166316 wgEncodeRegTfbsClusteredV3 PPARGC1A score:74, expCount:1, expNums:444, expScores:74, srow:6853
36516 chr1 2165941 2166324 wgEncodeRegTfbsClusteredV3 RCOR1 score:195, expCount:1, expNums:383, expScores:195, srow:6856
36516 chr1 2165971 2166350 wgEncodeRegTfbsClusteredV3 REST score:152, expCount:1, expNums:189, expScores:152, srow:6862
36516 chr1 2165974 2166273 wgEncodeRegTfbsClusteredV3 RXRA score:206, expCount:1, expNums:194, expScores:206, srow:6863
36516 chr1 2166032 2166195 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:235, expCount:1, expNums:195, expScores:235, srow:6873
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  • 25 of 41 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
36516 cellmeth_recounts PrEC: 0, LNCaP: 21, DU145: 0
36516 cellmeth_diffreps_PrECvsLNCaP A=0, B=16, Length=360, Event=Up, log2FC=Inf, padj=0.00011637956137607
36516 cellmeth_diffreps_LNCaPvsDU145 A=17.1, B=0, Length=360, Event=Down, log2FC=-Inf, padj=0.000215618666668937
36516 cellexp id=ENSG00000157933, name=SKI, PrEC=6991, str=5566, LNCaP=6867, str=7040, DU145=2963, str=2843
36516 tcgaexp gene=SKI, entrez=6497, pos=chr1:2160134-2241652(+), B=5692, L=5511, M=5343, H=5668
36516 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
36516 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305
36516 pubmed gene=SKI, G=2853, GP=19, GC=613, GM=9, GPM=0, GCM=3