DMR 40936 chr16:2391101-2391850 (750bp)

DMR Stats
Positionchr16:2391101-2391850 (View on UCSC)
Width750bp
Genomic Contextpromoter
Nearest GenesABCA17P (0bp away)
ANODEV p-value0.000180197983858
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
40936 ABCA17P 10788 uc002cqa.1 chr16 2389291 2417125 + 750 100.0 0.16 1 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
40936 ABCA17P 10788 uc002cqb.1 chr16 2390923 2412667 + 750 100.0 0.09 1 42.93 E1 (36.53), I1 (63.6), E2 (0), I2 (0), E3 (0) 0.0
40936 ABCA17P 10788 uc002cqc.1 chr16 2390923 2476700 + 750 100.0 0.12 1 42.93 E1 (36.53), I1 (63.6), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
40936 chr16 2391701 2392075 wgEncodeRegDnaseClusteredV2 17 score:310, srow:429404
40936 chr16 2391426 2391610 wgEncodeRegDnaseClusteredV2 2 score:267, srow:429403
40936 chr16 2390716 2391295 wgEncodeRegTfbsClusteredV3 ATF2 score:345, expCount:1, expNums:134, expScores:345, srow:1450883
40936 chr16 2390657 2391140 wgEncodeRegTfbsClusteredV3 ATF3 score:546, expCount:5, expNums:45,80,135,170,208, expScores:546,137,461,454,536, srow:1450875
40936 chr16 2390846 2391169 wgEncodeRegTfbsClusteredV3 BACH1 score:252, expCount:1, expNums:341, expScores:252, srow:1450918
40936 chr16 2390974 2391130 wgEncodeRegTfbsClusteredV3 BATF score:794, expCount:1, expNums:81, expScores:794, srow:1450940
40936 chr16 2390810 2391229 wgEncodeRegTfbsClusteredV3 BCLAF1 score:243, expCount:2, expNums:84,210, expScores:243,146, srow:1450910
40936 chr16 2390908 2391184 wgEncodeRegTfbsClusteredV3 BHLHE40 score:1000, expCount:4, expNums:276,284,423,472, expScores:569,1000,1000,1000, srow:1450930
40936 chr16 2390919 2391229 wgEncodeRegTfbsClusteredV3 CBX3 score:1000, expCount:1, expNums:211, expScores:1000, srow:1450931
40936 chr16 2390541 2391195 wgEncodeRegTfbsClusteredV3 CCNT2 score:403, expCount:1, expNums:476, expScores:370, srow:1450867
40936 chr16 2390705 2391154 wgEncodeRegTfbsClusteredV3 CHD2 score:243, expCount:2, expNums:380,479, expScores:243,204, srow:1450881
40936 chr16 2390614 2391189 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:99, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,262,267,290,463,493,595,597,598,601,603,604,605,606,607,609,612,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,648,649,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:1000,1000,1000,1000,730,806,1000,1000,1000,1000,868,1000,1000,1000,1000,1000,1000,1000,1000,982,1000,990,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,768,1000,414,634,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,858,1000,1000,780,1000,1000,765,1000,144,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,492,1000,1000,1000,639,1000,1000,741,622,1000,260,1000,750,1000,1000,640,1000,1000,1000,1000,973,374,1000,1000,729,1000,1000,1000,1000,610, srow:1450870
40936 chr16 2389707 2392164 cpgIsland CpG: 247 length:2458, cpgNum:247, gcNum:1608, perCpg:20.1, perGc:65.4, obsExp:0.94, srow:8677
40936 chr16 2390446 2391345 wgEncodeRegTfbsClusteredV3 E2F1 score:623, expCount:2, expNums:390,572, expScores:155,623, srow:1450862
40936 chr16 2390810 2391176 wgEncodeRegTfbsClusteredV3 E2F4 score:273, expCount:2, expNums:494,562, expScores:273,262, srow:1450911
40936 chr16 2390763 2391404 wgEncodeRegTfbsClusteredV3 E2F6 score:1000, expCount:3, expNums:215,386,495, expScores:1000,580,1000, srow:1450903
40936 chr16 2390862 2391297 wgEncodeRegTfbsClusteredV3 ELF1 score:482, expCount:3, expNums:50,88,217, expScores:280,482,305, srow:1450922
40936 chr16 2390700 2391305 wgEncodeRegTfbsClusteredV3 EP300 score:212, expCount:5, expNums:145,263,304,443,519, expScores:147,166,149,172,212, srow:1450879
40936 chr16 2390943 2391102 wgEncodeRegTfbsClusteredV3 ETS1 score:269, expCount:1, expNums:218, expScores:269, srow:1450933
40936 chr16 2391535 2392456 wgEncodeRegTfbsClusteredV3 EZH2 score:423, expCount:4, expNums:19,36,38,43, expScores:113,404,269,269, srow:1450943
40936 chr16 2390756 2391275 wgEncodeRegTfbsClusteredV3 FOXM1 score:376, expCount:1, expNums:90, expScores:376, srow:1450901
40936 chr16 2390834 2391162 wgEncodeRegTfbsClusteredV3 FOXP2 score:347, expCount:2, expNums:251,255, expScores:347,133, srow:1450914
40936 chr16 2390808 2391211 wgEncodeRegTfbsClusteredV3 GTF2F1 score:216, expCount:1, expNums:500, expScores:216, srow:1450909
40936 chr16 2390742 2391237 wgEncodeRegTfbsClusteredV3 HMGN3 score:208, expCount:1, expNums:501, expScores:208, srow:1450893
40936 chr16 2390883 2391178 wgEncodeRegTfbsClusteredV3 HNF4A score:143, expCount:1, expNums:432, expScores:143, srow:1450927
  • Page 1 of 3
  • 25 of 66 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
40936 cellmeth_recounts PrEC: 27, LNCaP: 2020, DU145: 27
40936 cellmeth_diffreps_PrECvsLNCaP A=71, B=2529, Length=1560, Event=Up, log2FC=5.15, padj=0
40936 cellmeth_diffreps_LNCaPvsDU145 A=2699.34, B=26.19, Length=1480, Event=Down, log2FC=-6.69, padj=0
40936 cellexp id=ENSG00000238098, name=ABCA17P, PrEC=1, str=0, LNCaP=162, str=123, DU145=30, str=16
40936 tcgaexp gene=ABCA17P, entrez=650655, pos=chr16:2389291-2476700(+), B=11, L=8, M=9, H=9
40936 pubmed gene=ABCA3, G=200, GP=0, GC=36, GM=0, GPM=0, GCM=0
40936 pubmed gene=ABCA17P, G=2, GP=0, GC=0, GM=0, GPM=0, GCM=0